RchiOBHm_Chr3g0476771

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000112
Physical Location & Seq
Forward (+)
22741894 .. 22743000
1107 bp
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UTR
Exon/CDS
Intron
PRQ44216

Sequence Viewer

Length: 1107 bp
ATGAAAAAGGACATCTGGTCATTTTTTATATTCACACATAGCCAGATTGCAAACGCCCTGAAAATGCTGTTGAAATCTCTGCTTCTCTTCCTCCTCTTCCAAGTTTGCACTTCCAGGGACACCTTAAGATCGAACGAAGAACTGAAGGATGATGATGGTGGACTTCTGGTGTCCAAAGAAAGCAGCTTTGAGTTGGGTTTCTTCAGCCCCGGAAATTCTAGCAACCGCTATGTTGGGATTTGGTATTCTCAATGTAAAGTATCTGAAAAAACAGTGGTGTGGATCGCAAACAGAGACAACCCCATCAATGATACCTCTGGAGTTTTCACCATAAACAGGTATGGAGACCTAGTTCTTTATGCTTATAACATGGAGACCAGTCCTATTTGGTCTGCAGATGTGCCTCATTCAGTCAAAAACACTGGCACCTTATCTGCATATGTACAGCTGTTGGATACAGGAAACTTAGTTATGTTCCAGAATGATAGAGATGGAATCTTTGTATGGCAAAGTTTTGATTATCCTACAGATACTTTAATCCCTGGTATGAAAGTTGGGATGAATCGGAAAACTGGGCTAGAATGGGTTTTAACATCTTGGAAGTCACTAGATGACCCTGGAACTGGGGACTATACCTTTAGGCTTCATAATTGGAGCCACGTTGTCACACCCCAGTATTTTATTTATAAAGGTTTGTCTAAGTATTGGCGAGGTGATACAGAGCCTTGGCCTAATTCGATCCGAAATGCAGAGGAAATGTCTTTTTTCCTTACCTATAACACCAATAAACTTACAATAATGAAGTTGATGTTTTCTGGGCTACATCAGCACTTGGTATGGAGTGATGCTGACCATCAATGGAAGGAGTTGTGGTCTTCGCCGAAATACAGGTGTGACTGGTATGGACATTGTGGTGCCAACAGCAAATGTAGCCTTGACAGTGGTAATCTGTTCGAGTGTGAGTGTCTACCGGGGTATGAACCAAAATCTATAAATGGTTGGAACGGGAGAGATGGGTCAGATGGATGTGTGAGTAAACGAGTCAAAGTGTCAGAGTGTAGAAATGGAGAAGGGTTTGTGAAGGTGGAAAGGGTGAAAGTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

368

Amino Acids

42.21

Weight (kDa)

6.46

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 91 - 201 2.6e-35 D-mannose binding lectin
S_locus_glycop PF00954 251 - 330 1.6e-15 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 366, 687
AccB1I GGYRCC 2 cut(s) 425, 914
AccI GTMKAC 1 cut(s) 967
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 290, 733
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 2 cut(s) 164, 187
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 336, 623
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 73
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 3 cut(s) 113, 541, 616
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 2 cut(s) 186, 448
AluI AGCT 2 cut(s) 186, 448
Alw26I GTCTC 3 cut(s) 288, 339, 368
AlwI GGATC 2 cut(s) 290, 733
AoxI GGCC 1 cut(s) 728
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 214
AsuC2I CCSGG 2 cut(s) 210, 972
AsuHPI GGTGA 3 cut(s) 319, 725, 1105
BanI GGYRCC 2 cut(s) 425, 914
BbsI GAAGAC 1 cut(s) 867
BbvI GCAGC 1 cut(s) 195
BccI CCATC 6 cut(s) 149, 311, 485, 861, 1007, 1016
BciT130I CCWGG 3 cut(s) 115, 543, 618
BciVI GTATCC 1 cut(s) 448
BcnI CCSGG 2 cut(s) 210, 972
BcoDI GTCTC 3 cut(s) 288, 339, 368
BfaI CTAG 4 cut(s) 219, 350, 578, 608
BfmI CTRYAG 2 cut(s) 393, 525
BfrI CTTAAG 1 cut(s) 124
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 5 cut(s) 115, 210, 543, 618, 972
BmeRI GACNNNNNGTC 1 cut(s) 16
BmiI GGNNCC 3 cut(s) 427, 656, 916
BmrFI CCNGG 5 cut(s) 115, 210, 543, 618, 972
BmrI ACTGGG 3 cut(s) 582, 633, 667
BmsI GCATC 1 cut(s) 835
BmuI ACTGGG 3 cut(s) 582, 633, 667
BpiI GAAGAC 1 cut(s) 867
BpmI CTGGAG 1 cut(s) 339
BpuMI CCSGG 2 cut(s) 210, 972
BsaI GGTCTC 2 cut(s) 339, 368
BsaJI CCNNGG 6 cut(s) 114, 208, 541, 616, 725, 971
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 857, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 623
Bse1I ACTGG 6 cut(s) 378, 427, 577, 628, 673, 902
BseBI CCWGG 3 cut(s) 115, 543, 618
BseDI CCNNGG 6 cut(s) 114, 208, 541, 616, 725, 971
BseGI GGATG 3 cut(s) 154, 564, 1031
BseLI CCNNNNNNNGG 2 cut(s) 336, 623
BseNI ACTGG 6 cut(s) 378, 427, 577, 628, 673, 902
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 195
BshFI GGCC 1 cut(s) 730
BshNI GGYRCC 2 cut(s) 425, 914
BsiSI CCGG 2 cut(s) 210, 971
BslFI GGGAC 2 cut(s) 131, 641
BslI CCNNNNNNNGG 2 cut(s) 336, 623
BsmAI GTCTC 3 cut(s) 288, 339, 368
BsmFI GGGAC 2 cut(s) 131, 641
BsnI GGCC 1 cut(s) 730
Bso31I GGTCTC 2 cut(s) 339, 368
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 3 cut(s) 128, 282, 738
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 427, 656, 916
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 2 cut(s) 290, 733
BspT107I GGYRCC 2 cut(s) 425, 914
BspTI CTTAAG 1 cut(s) 124
BspTNI GGTCTC 2 cut(s) 339, 368
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 6 cut(s) 378, 427, 577, 628, 673, 902
BssECI CCNNGG 6 cut(s) 114, 208, 541, 616, 725, 971
BssMI GATC 3 cut(s) 128, 282, 738
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 3 cut(s) 115, 543, 618
Bst4CI ACNGT 2 cut(s) 274, 941
Bst6I CTCTTC 2 cut(s) 92, 101
BstAFI CTTAAG 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 466, 699
BstF5I GGATG 3 cut(s) 154, 564, 1031
BstKTI GATC 3 cut(s) 131, 285, 741
BstMAI GTCTC 3 cut(s) 288, 339, 368
BstMBI GATC 3 cut(s) 128, 282, 738
BstMWI GCNNNNNNNGC 2 cut(s) 826, 930
BstNI CCWGG 3 cut(s) 115, 543, 618
BstSCI CCNGG 5 cut(s) 113, 208, 541, 616, 970
BstSFI CTRYAG 2 cut(s) 393, 525
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 867
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 730
BtsCI GGATG 3 cut(s) 154, 564, 1031
BtsIMutI CAGTG 3 cut(s) 279, 420, 946
Csp6I GTAC 1 cut(s) 443
CviAII CATG 1 cut(s) 370
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 2 cut(s) 466, 699
DpnI GATC 3 cut(s) 130, 284, 740
DpnII GATC 3 cut(s) 128, 282, 738
DriI GACNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 92, 101
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 2 cut(s) 92, 101
Eco130I CCWWGG 1 cut(s) 725
Eco31I GGTCTC 2 cut(s) 339, 368
Eco57I CTGAAG 2 cut(s) 164, 187
EcoRII CCWGG 3 cut(s) 113, 541, 616
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 1 cut(s) 373
FaqI GGGAC 2 cut(s) 131, 641
FatI CATG 1 cut(s) 369
FauNDI CATATG 1 cut(s) 439
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 3 cut(s) 161, 571, 1038
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 4 cut(s) 219, 350, 578, 608
GluI GCNGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 730
HapII CCGG 2 cut(s) 210, 971
Hin1II CATG 1 cut(s) 373
HinfI GANTC 3 cut(s) 495, 562, 1041
HpaII CCGG 2 cut(s) 210, 971
HphI GGTGA 3 cut(s) 319, 725, 1105
Hpy166II GTNNAC 3 cut(s) 161, 968, 1037
Hpy188I TCNGA 5 cut(s) 265, 567, 743, 1021, 1054
Hpy188III TCNNGA 2 cut(s) 318, 478
Hpy8I GTNNAC 3 cut(s) 161, 968, 1037
HpyAV CCTTC 4 cut(s) 139, 856, 1064, 1075
HpyCH4III ACNGT 2 cut(s) 274, 941
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 5 cut(s) 50, 108, 395, 437, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 826, 930
HpyF3I CTNAG 2 cut(s) 466, 699
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 3 cut(s) 128, 282, 738
LmnI GCTCC 1 cut(s) 654
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 835
MaeI CTAG 4 cut(s) 219, 350, 578, 608
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 3 cut(s) 603, 664, 893
MalI GATC 3 cut(s) 130, 284, 740
MboI GATC 3 cut(s) 128, 282, 738
MboII GAAGA 5 cut(s) 79, 88, 149, 193, 867
MluCI AATT 3 cut(s) 214, 649, 733
MlyI GAGTC 1 cut(s) 1050
MmeI TCCRAC 2 cut(s) 432, 980
MnlI CCTC 6 cut(s) 101, 104, 325, 414, 704, 745
MseI TTAA 3 cut(s) 125, 536, 590
MslI CAYNNNNRTG 1 cut(s) 912
MspA1I CMGCKG 1 cut(s) 448
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 2 cut(s) 210, 971
MspR9I CCNGG 5 cut(s) 115, 210, 543, 618, 972
MvaI CCWGG 3 cut(s) 115, 543, 618
MwoI GCNNNNNNNGC 2 cut(s) 826, 930
NciI CCSGG 2 cut(s) 210, 972
NdeI CATATG 1 cut(s) 439
NdeII GATC 3 cut(s) 128, 282, 738
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 3 cut(s) 427, 656, 916
NmuCI GTSAC 3 cut(s) 603, 664, 893
PfeI GAWTC 2 cut(s) 495, 562
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 1049
PpsI GAGTC 1 cut(s) 1049
PsiI TTATAA 2 cut(s) 366, 687
Psp6I CCWGG 3 cut(s) 113, 541, 616
PspGI CCWGG 3 cut(s) 113, 541, 616
PspN4I GGNNCC 3 cut(s) 427, 656, 916
PstI CTGCAG 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 3 cut(s) 125, 536, 590
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 3 cut(s) 128, 282, 738
SchI GAGTC 1 cut(s) 1050
ScrFI CCNGG 5 cut(s) 115, 210, 543, 618, 972
SfaNI GCATC 1 cut(s) 835
SfcI CTRYAG 2 cut(s) 393, 525
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 3 cut(s) 214, 649, 733
SsiI CCGC 1 cut(s) 226
SspMI CTAG 4 cut(s) 219, 350, 578, 608
StyD4I CCNGG 5 cut(s) 113, 208, 541, 616, 970
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 2 cut(s) 274, 941
TaiI ACGT 1 cut(s) 663
TaqI TCGA 3 cut(s) 131, 737, 954
TasI AATT 3 cut(s) 214, 649, 733
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 2 cut(s) 495, 562
Tru1I TTAA 3 cut(s) 125, 536, 590
Tru9I TTAA 3 cut(s) 125, 536, 590
TscAI CASTG 3 cut(s) 279, 427, 946
TseFI GTSAC 3 cut(s) 603, 664, 893
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 3 cut(s) 603, 664, 893
TspDTI ATGAA 6 cut(s) 17, 563, 575, 635, 815, 993
TspRI CASTG 3 cut(s) 279, 427, 946
Vha464I CTTAAG 1 cut(s) 124
XapI RAATTY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 967
XspI CTAG 4 cut(s) 219, 350, 578, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.