Rw0G018230

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00811
Physical Location & Seq
Reverse (-)
7664 .. 8292
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018230.1

Sequence Viewer

Length: 519 bp
ATGGTCAACCTGAAGCTCAAACTACAAGACTTCAGAGTTCAGAATGCGCGTAAACAGCTAGTAGAATTGTCAACAACAGAGACACTGGAAATGGACACCATCAGATGGAATGAACAACAATTGAAGGATGTTGATGGTGAAGTTTTGGTGTCCAAAGAAAGCAACTTTGAGTTGGGTTTCTTCAGCCCCGGCGATTCTAGCCACCGGTACGTTGGTATTTGGTATTCTCAATCTAAAATATCTGCAAAAACAGTGGTGTGGATCGCAAACAGAGACAGCCCCATCAATGATACCTCTGGAGTTCTCACAATTAACAGGTGTGGGGAATTAGCTCTTTATGCTTATAACATGGAGAGCATTCCTGTATGGTCTACAAATGTATCACAGTCGGTCCAAAACACAGACACCTTATATAGATATGTCCAGCTTTTGGATACTGGAAACTTAATTCTGTTCCGGGATGGTAGAAATGGAAGCTTGATTTTATGGCAAAGTTTGATTATCCTGCAGATACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

172

Amino Acids

19.68

Weight (kDa)

5.17

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 84 - 166 6e-19 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccB7I CCANNNNNTGG 2 cut(s) 105, 430
AccI GTMKAC 1 cut(s) 371
AccII CGCG 1 cut(s) 49
AclWI GGATC 1 cut(s) 269
AcuI CTGAAG 3 cut(s) 16, 32, 166
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 105, 430
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 5 cut(s) 16, 58, 332, 427, 477
AluI AGCT 5 cut(s) 16, 58, 332, 427, 477
Alw26I GTCTC 2 cut(s) 74, 267
AlwI GGATC 1 cut(s) 269
AsiGI ACCGGT 1 cut(s) 204
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 2 cut(s) 189, 458
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 391
BaeI ACNNNNGTAYC 4 cut(s) 199, 232, 363, 396
BccI CCATC 5 cut(s) 99, 107, 128, 290, 455
BciVI GTATCC 1 cut(s) 427
BcnI CCSGG 2 cut(s) 189, 458
BcoDI GTCTC 2 cut(s) 74, 267
BfaI CTAG 2 cut(s) 59, 198
BfmI CTRYAG 1 cut(s) 506
BfuI GTATCC 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 189, 458
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 189, 458
BpmI CTGGAG 1 cut(s) 318
BpuMI CCSGG 2 cut(s) 189, 458
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 430
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 90, 442
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 133, 466
BseLI CCNNNNNNNGG 2 cut(s) 105, 430
BseNI ACTGG 2 cut(s) 90, 442
Bsh1236I CGCG 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 204
BsiSI CCGG 3 cut(s) 189, 205, 457
BslI CCNNNNNNNGG 2 cut(s) 105, 430
BsmAI GTCTC 2 cut(s) 74, 267
BsmI GAATGC 2 cut(s) 49, 357
Bsp143I GATC 1 cut(s) 261
BspFNI CGCG 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 2 cut(s) 90, 442
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 253, 387
BstF5I GGATG 2 cut(s) 133, 466
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 74, 267
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 55, 198, 338
BstSCI CCNGG 2 cut(s) 187, 456
BstSFI CTRYAG 1 cut(s) 506
BstUI CGCG 1 cut(s) 49
BsuI GTATCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 133, 466
BtsIMutI CAGTG 2 cut(s) 83, 258
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 1 cut(s) 349
CviJI RGCY 8 cut(s) 16, 58, 186, 201, 279, 332, 427, 477
CviKI_1 RGCY 8 cut(s) 16, 58, 186, 201, 279, 332, 427, 477
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 3 cut(s) 16, 32, 166
FaeI CATG 1 cut(s) 352
FaiI YATR 8 cut(s) 339, 345, 350, 367, 412, 414, 420, 487
FatI CATG 1 cut(s) 348
FblI GTMKAC 1 cut(s) 371
FokI GGATG 2 cut(s) 140, 473
FspBI CTAG 2 cut(s) 59, 198
GlaI GCGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 318
HapII CCGG 3 cut(s) 189, 205, 457
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 2 cut(s) 7, 72
HindII GTYRAC 2 cut(s) 7, 72
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 1 cut(s) 194
HpaII CCGG 3 cut(s) 189, 205, 457
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 4 cut(s) 7, 53, 72, 372
Hpy188I TCNGA 3 cut(s) 35, 42, 104
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 4 cut(s) 7, 53, 72, 372
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 253, 387
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 245, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 198, 338
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 59, 198
MaeII ACGT 1 cut(s) 210
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 1 cut(s) 172
MfeI CAATTG 1 cut(s) 119
MluCI AATT 5 cut(s) 65, 119, 309, 326, 447
MnlI CCTC 1 cut(s) 304
MseI TTAA 2 cut(s) 312, 446
MspI CCGG 3 cut(s) 189, 205, 457
MspR9I CCNGG 2 cut(s) 189, 458
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 2 cut(s) 49, 357
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 55, 198, 338
NciI CCSGG 2 cut(s) 189, 458
NdeII GATC 1 cut(s) 261
NlaIII CATG 1 cut(s) 352
PctI GAATGC 2 cut(s) 49, 357
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 2 cut(s) 105, 430
PfoI TCCNGGA 1 cut(s) 456
PinAI ACCGGT 1 cut(s) 204
PsiI TTATAA 1 cut(s) 345
PspPI GGNCC 1 cut(s) 391
PstI CTGCAG 1 cut(s) 510
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 312, 446
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 189, 458
SfcI CTRYAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 391
Sse9I AATT 5 cut(s) 65, 119, 309, 326, 447
SspMI CTAG 2 cut(s) 59, 198
StyD4I CCNGG 2 cut(s) 187, 456
TaaI ACNGT 2 cut(s) 253, 387
TaiI ACGT 1 cut(s) 213
TaqII GACCGA 1 cut(s) 379
TasI AATT 5 cut(s) 65, 119, 309, 326, 447
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 312, 446
Tru9I TTAA 2 cut(s) 312, 446
TscAI CASTG 2 cut(s) 90, 258
TspDTI ATGAA 1 cut(s) 126
TspRI CASTG 2 cut(s) 90, 258
Van91I CCANNNNNTGG 2 cut(s) 105, 430
VpaK11BI GGWCC 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 2 cut(s) 59, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.