RLG00000031293

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
3805477 .. 3805998
522 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031293

Sequence Viewer

Length: 423 bp
ATGTTTCCGAGTACTTTGCTTTTGTTCCTTCTCTTCCCATTTTGCAGATCCACAGACACAATAGGACCAAACCAGTATGTCAAGGATGGGGATACCATAGTATTCAAAGAAATAAAGTTTGAGTTAGGCTTCTTCAGCCCTGGAAACTCTAGTTATCAGTATGTTGGAATTTGGTATGCTAAAGTACCTCAAAAACCAGTGGTATGGGTGGCAAACAGAGAGAAGCCGCTTACTGGTTCTTCTGGTGTACTCACAATAGGCAGGAATGGAAGCCTGGAAACTTGGTTTTGGTCCAAGGTGAAAGTAGTGAAGATGCAAAGCTTTGATTATCCTACAAGATACTATGCTTCCAGGAATGAAACTTGGGTTAAATCGGGAGGTCCAGCTGAACAGCTTCTTAACATCCTGGAAGTCACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

9.21

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 3 cut(s) 13, 186, 249
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 4 cut(s) 139, 273, 350, 405
AluBI AGCT 3 cut(s) 321, 386, 394
AluI AGCT 3 cut(s) 321, 386, 394
AlwI GGATC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 3 cut(s) 65, 291, 380
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 3 cut(s) 65, 291, 380
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BccI CCATC 1 cut(s) 80
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 4 cut(s) 141, 275, 352, 407
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 4 cut(s) 141, 275, 352, 407
Bme18I GGWCC 3 cut(s) 65, 291, 380
BmgT120I GGNCC 3 cut(s) 65, 291, 380
BmrFI CCNGG 4 cut(s) 141, 275, 352, 407
BmsI GCATC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 139, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 73, 197, 238
BseBI CCWGG 4 cut(s) 141, 275, 352, 407
BseDI CCNNGG 2 cut(s) 139, 294
BseGI GGATG 2 cut(s) 91, 402
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 3 cut(s) 73, 197, 238
BslI CCNNNNNNNGG 1 cut(s) 233
Bsp143I GATC 1 cut(s) 47
BspACI CCGC 1 cut(s) 227
BspPI GGATC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 73, 197, 238
BssECI CCNNGG 2 cut(s) 139, 294
BssMI GATC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 141, 275, 352, 407
Bst6I CTCTTC 1 cut(s) 38
BstF5I GGATG 2 cut(s) 91, 402
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 4 cut(s) 141, 275, 352, 407
BstSCI CCNGG 4 cut(s) 139, 273, 350, 405
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 47
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 91, 402
BtsIMutI CAGTG 1 cut(s) 204
Cfr13I GGNCC 3 cut(s) 65, 291, 380
Csp6I GTAC 3 cut(s) 12, 185, 248
CviAII CATG 1 cut(s) 420
CviJI RGCY 7 cut(s) 129, 138, 226, 273, 321, 386, 394
CviKI_1 RGCY 7 cut(s) 129, 138, 226, 273, 321, 386, 394
CviQI GTAC 3 cut(s) 12, 185, 248
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 3 cut(s) 65, 291, 380
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 4 cut(s) 139, 273, 350, 405
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 423
FaiI YATR 7 cut(s) 78, 98, 162, 177, 205, 345, 421
FatI CATG 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 2 cut(s) 98, 389
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 319
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 45, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 423
Kzo9I GATC 1 cut(s) 47
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 4 cut(s) 25, 124, 231, 322
MflI RGATCY 1 cut(s) 47
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 198, 371
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 369, 399
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 4 cut(s) 141, 275, 352, 407
MvaI CCWGG 4 cut(s) 141, 275, 352, 407
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 1 cut(s) 47
NlaIII CATG 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 393
PfoI TCCNGGA 2 cut(s) 350, 405
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 4 cut(s) 139, 273, 350, 405
PspGI CCWGG 4 cut(s) 139, 273, 350, 405
PspPI GGNCC 3 cut(s) 65, 291, 380
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 3 cut(s) 13, 186, 249
RsaNI GTAC 3 cut(s) 12, 185, 248
SaqAI TTAA 2 cut(s) 369, 399
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 3 cut(s) 65, 291, 380
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 4 cut(s) 141, 275, 352, 407
SetI ASST 6 cut(s) 190, 300, 323, 382, 388, 396
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 3 cut(s) 65, 291, 380
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 139, 273, 350, 405
StyI CCWWGG 1 cut(s) 294
TasI AATT 1 cut(s) 168
TatI WGTACW 2 cut(s) 11, 247
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 369, 399
Tru9I TTAA 2 cut(s) 369, 399
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 3 cut(s) 65, 291, 380
XapI RAATTY 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.