Rorug05G0068100

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000112
Physical Location & Seq
Reverse (-)
5827340 .. 5832417
5078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0068100.1

Sequence Viewer

Length: 2163 bp
ATGGCGGGTCTGATCGATCTGAACAGCACGACGGAGGAGGAGGAGGAGACTCCGTCTTCTGGGTCCTCGTCCAATTCCTCCGGCTCTAATGCTTTGATTTCTGGGTCTGTTTGCTTGGAGCTGTGGCACGCTTGTGCTGGACCACTGATTTCTTTGCCCAAGAAAGGCAGTGTGGTGGTTTATCTTCCACAAGGGCACTTGGAGCAAGTGAATGATTTTCCGGCGTCGGTTTATGATCTTCCTGCTCATCTCTTCTGCCGAGTTGTCGATGTTAAGCTCCATGCGGAGACTGGTAGTGATGAAGTCTACGCACAGGTTCAGTTGGTTCCTGAAAGTGAGGAATTTGAGCACAAACTAGGGGAAGGGGAAACTGATGCAGATGGGGATGAGGATGCTGAGGCATTAGAGAAATCGACTACACCCCATATGTTCTGCAAAACCCTTACTGCTTCCGATACTAGCACTCATGGAGGCTTCTCTGTCCCTCGCCGTGCTGCTGAGGATTGTTTTCCTCCCCTGGATTATAGTCAACAAAGGCCTTCACAGGAGCTGGTGGCAAAGGATCTACATGGCCTGGAGTGGAGGTTCAGACATATTTATAGGGGGCAGCCGCGCAGGCATTTGCTCACCACTGGATGGAGTGCCTTTGTGAACAAGAAGAAGCTCGTTTCTGGAGATGCTGTGTTGTTTCTGAGGGGTGAGGATGGAGAACTGAGACTTGGAGTTAGAAGAGCAGCCCAAGTAAAAGCTTCTGCTACTTATCCAACTCCTTGTAGCCAGCATTTAAACTATAACTCTGTCGCAGAGGTGGTGGATGCAATAACTATGAAGACTGCTTTTAACGTGTACTACAATCCAAGAGCCAGCTCATCAGAATTCATAATACCTTTCCATAAATTTTTGAGGAGCCTTGGTCATTCCTTCTGTGCTGGAATGAGGTTTAAAATGCGCTTTGAAACAGAAGATGCAGCAGAGCGAAGATACACTGGACTGGTAACTGGGATCAGTGAGTTGGATCCCCTGAGATGGTCTGGTTCCAAATGGAAATGTCTAGTTGTAAGGTGGGATGATATAGATACTAGCAAGCAGCATGGCCGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTATTTCTAATTCCAGTGGCTTAATGGCATCTGGTTTGAAGAGGTCCAGGATGGGCTTATCTGCAGAAAAACAAGAATTTCCAGTTCCTCATGGGATTGGAGCCTCAGACTTTGGGGAATCTTTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCGGGTTTTGATACTCCTTTTGGTTCTATAGGGGGTCAAAATCAGCATCCCTCTGAATCGAGGAGAGTCTTTCATGGCTCTATTGGTTCTAGAGGTAATGATCTCAGAAACTCACTTGTGAATTCTGAGATTGCCTCAAAAGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCACACCATATGGAAGAGCTCCAGCTACAAGTGAGGCTCGTGAATATGGTTCCCCTGGAATCTTTGATGGTTTTCAGGTGCCAAGCTTTAGAAATGGATGGTCTACGATGATGCAGGGCAATAATACACCTATGCACCGAGCTGCTCCTGTACAAGTGTCATCACCATCATCTGTGTTGATGTTTCAGCAAGCAATGAATGCAGGAGCTGAGTTCAATTCCGTATACAATGGTCATAACCAAGAGGAACAGAGAATTATGCAACGCAATCCTTATTCTGAATCAGATGGGGGAAAGCCAACACCATCCTCATTCTGTGAACGGAGCTTCAGCAGGGAAGGTCATGGAGGCATGAATTCTTTTCAACATGCTATTTCACATCCTCCTCATTCAAGTCAGTCTTCATTGAGAGGCAGTCAAGACATGGTTTCATCATGCAAAAGTAGCTGCAGACTCTTTGGTTTCTCACTGTCTGAGGAAACACATGCCCCAAATAAAGTGGACAACTCCACCTCAGTTGCATCTACATTAGATCCTGGAGCTTCTTTGTTCCCCAATGTTGAACCACGGTTTCATTCAAAGCCTCCTTTGATGTCTGCAGCAGTTGGAATTCCCTGTACCAAAGAATGGGCTTTTGACTGGCGTGGAGAAAGGATGGAAAGTTGTTTACAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

720

Amino Acids

79.08

Weight (kDa)

6.05

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 144 - 245 2e-23 B3 DNA binding domain
ARF_AD PF06507 293 - 375 2.2e-33 Auxin response factor ancillary domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1564
AccB7I CCANNNNNTGG 2 cut(s) 636, 2112
AccI GTMKAC 3 cut(s) 306, 1589, 1710
AccII CGCG 1 cut(s) 613
AciI CCGC 3 cut(s) 5, 284, 611
AclWI GGATC 5 cut(s) 570, 1010, 1010, 1023, 2012
AcoI YGGCCR 1 cut(s) 1093
AcsI RAATTY 8 cut(s) 341, 875, 896, 1205, 1284, 1408, 1840, 2094
AcuI CTGAAG 1 cut(s) 1798
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 3 cut(s) 848, 1638, 2104
AfiI CCNNNNNNNGG 5 cut(s) 59, 164, 636, 1026, 2112
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 7 cut(s) 956, 1168, 1702, 1850, 1878, 2048, 2064
AjnI CCWGG 5 cut(s) 516, 573, 1175, 1540, 2020
AjuI GAANNNNNNNTTGG 2 cut(s) 702, 734
AleI CACNNNNGTG 1 cut(s) 132
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
Alw21I GWGCWC 2 cut(s) 351, 1507
Alw26I GTCTC 3 cut(s) 41, 281, 709
AlwI GGATC 5 cut(s) 570, 1010, 1010, 1023, 2012
AlwNI CAGNNNCTG 2 cut(s) 550, 1694
AoxI GGCC 3 cut(s) 536, 571, 1093
ApeKI GCWGC 8 cut(s) 494, 607, 734, 968, 1087, 1628, 1932, 2084
ApoI RAATTY 8 cut(s) 341, 875, 896, 1205, 1284, 1408, 1840, 2094
Asp700I GAANNNNTTC 1 cut(s) 1479
AspLEI GCGC 2 cut(s) 615, 951
AspS9I GGNCC 3 cut(s) 63, 140, 1173
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 4 cut(s) 619, 710, 1448, 1641
AvaII GGWCC 3 cut(s) 63, 140, 1173
BaeGI GKGCMC 1 cut(s) 198
BamHI GGATCC 1 cut(s) 1015
BanI GGYRCC 1 cut(s) 1564
BanII GRGCYC 1 cut(s) 1507
BauI CACGAG 1 cut(s) 1524
BbsI GAAGAC 3 cut(s) 48, 836, 1878
Bbv12I GWGCWC 2 cut(s) 351, 1507
BbvCI CCTCAGC 2 cut(s) 396, 498
BbvI GCAGC 8 cut(s) 481, 619, 746, 980, 1099, 1615, 1919, 2096
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 5 cut(s) 518, 575, 1177, 1542, 2022
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 3 cut(s) 41, 281, 709
BfaI CTAG 5 cut(s) 356, 459, 1052, 1080, 1377
BfmI CTRYAG 4 cut(s) 1191, 1314, 1933, 2082
BglI GCCNNNNNGGC 1 cut(s) 616
BisI GCNGC 9 cut(s) 495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
BlsI GCNGC 9 cut(s) 496, 609, 612, 736, 970, 1089, 1630, 1934, 2086
Bme1390I CCNGG 6 cut(s) 518, 575, 1097, 1177, 1542, 2022
Bme18I GGWCC 3 cut(s) 63, 140, 1173
BmgT120I GGNCC 3 cut(s) 63, 140, 1173
BmiI GGNNCC 8 cut(s) 64, 327, 908, 1017, 1036, 1231, 1537, 1566
BmrFI CCNGG 6 cut(s) 518, 575, 1097, 1177, 1542, 2022
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 9 cut(s) 364, 382, 667, 805, 955, 1166, 1342, 1587, 2015
BmuI ACTGGG 1 cut(s) 1008
BpiI GAAGAC 3 cut(s) 48, 836, 1878
BplI GAGNNNNNCTC 2 cut(s) 1406, 1438
BpmI CTGGAG 4 cut(s) 596, 693, 1491, 2043
Bpu10I CCTNAGC 2 cut(s) 396, 498
BpuMI CCSGG 1 cut(s) 1097
Bsa29I ATCGAT 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 5 cut(s) 516, 910, 1106, 1540, 2051
BsaXI ACNNNNNCTCC 8 cut(s) 38, 68, 569, 599, 666, 696, 898, 928
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 164, 636, 1026, 2112
Bse1I ACTGG 8 cut(s) 295, 637, 991, 996, 1003, 1143, 1211, 2129
Bse3DI GCAATG 1 cut(s) 1686
BseBI CCWGG 5 cut(s) 518, 575, 1177, 1542, 2022
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 5 cut(s) 516, 910, 1106, 1540, 2051
BseLI CCNNNNNNNGG 5 cut(s) 59, 164, 636, 1026, 2112
BseMI GCAATG 1 cut(s) 1686
BseNI ACTGG 8 cut(s) 295, 637, 991, 996, 1003, 1143, 1211, 2129
BseRI GAGGAG 7 cut(s) 50, 53, 56, 59, 919, 1363, 1860
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 8 cut(s) 481, 619, 746, 980, 1099, 1615, 1919, 2096
Bsh1236I CGCG 1 cut(s) 613
BshFI GGCC 3 cut(s) 538, 573, 1095
BshNI GGYRCC 1 cut(s) 1564
BshVI ATCGAT 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 351, 1507
BsiSI CCGG 3 cut(s) 81, 221, 1096
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 5 cut(s) 59, 164, 636, 1026, 2112
BsmAI GTCTC 3 cut(s) 41, 281, 709
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 1690
BsnI GGCC 3 cut(s) 538, 573, 1095
Bsp1286I GDGCHC 3 cut(s) 198, 351, 1507
Bsp1407I TGTACA 1 cut(s) 1636
Bsp143I GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
Bsp19I CCATGG 1 cut(s) 1106
BspACI CCGC 3 cut(s) 5, 284, 611
BspANI GGCC 3 cut(s) 538, 573, 1095
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 1 cut(s) 613
BspLI GGNNCC 8 cut(s) 64, 327, 908, 1017, 1036, 1231, 1537, 1566
BspMAI CTGCAG 3 cut(s) 1195, 1937, 2086
BspPI GGATC 5 cut(s) 570, 1010, 1010, 1023, 2012
BspQI GCTCTTC 2 cut(s) 724, 1495
BspT107I GGYRCC 1 cut(s) 1564
BsrDI GCAATG 1 cut(s) 1686
BsrGI TGTACA 1 cut(s) 1636
BsrI ACTGG 8 cut(s) 295, 637, 991, 996, 1003, 1143, 1211, 2129
BssECI CCNNGG 5 cut(s) 516, 910, 1106, 1540, 2051
BssMI GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
BssNAI GTATAC 1 cut(s) 1711
BssNI GRCGYC 1 cut(s) 224
BssSI CACGAG 1 cut(s) 1524
BssT1I CCWWGG 2 cut(s) 910, 1106
Bst1107I GTATAC 1 cut(s) 1711
Bst2BI CACGAG 1 cut(s) 1524
Bst2UI CCWGG 5 cut(s) 518, 575, 1177, 1542, 2022
Bst4CI ACNGT 2 cut(s) 1956, 2055
Bst6I CTCTTC 4 cut(s) 257, 724, 1163, 1495
BstACI GRCGYC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 1685
BstAUI TGTACA 1 cut(s) 1636
BstC8I GCNNGC 6 cut(s) 129, 617, 779, 865, 1085, 1677
BstDSI CCRYGG 2 cut(s) 1106, 2051
BstFNI CGCG 1 cut(s) 613
BstHHI GCGC 2 cut(s) 615, 951
BstKTI GATC 8 cut(s) 15, 19, 238, 565, 1005, 1018, 1390, 2020
BstMAI GTCTC 3 cut(s) 41, 281, 709
BstMBI GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
BstMWI GCNNNNNNNGC 4 cut(s) 202, 616, 1685, 1929
BstNI CCWGG 5 cut(s) 518, 575, 1177, 1542, 2022
BstNSI RCATGY 2 cut(s) 1856, 1973
BstSCI CCNGG 6 cut(s) 516, 573, 1095, 1175, 1540, 2020
BstSFI CTRYAG 4 cut(s) 1191, 1314, 1933, 2082
BstSLI GKGCMC 1 cut(s) 198
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 8 cut(s) 481, 619, 746, 980, 1099, 1615, 1919, 2096
BstV2I GAAGAC 3 cut(s) 48, 836, 1878
BstX2I RGATCY 3 cut(s) 562, 1015, 2017
BstYI RGATCY 3 cut(s) 562, 1015, 2017
BstZ17I GTATAC 1 cut(s) 1711
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 3 cut(s) 538, 573, 1095
BsuTUI ATCGAT 1 cut(s) 15
BtgI CCRYGG 2 cut(s) 1106, 2051
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 7 cut(s) 143, 175, 630, 984, 1012, 1150, 1952
Cac8I GCNNGC 6 cut(s) 129, 617, 779, 865, 1085, 1677
CaiI CAGNNNCTG 2 cut(s) 550, 1694
CfoI GCGC 2 cut(s) 615, 951
Cfr13I GGNCC 3 cut(s) 63, 140, 1173
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 1 cut(s) 213
Csp6I GTAC 3 cut(s) 847, 1637, 2103
CspCI CAANNNNNGTGG 4 cut(s) 1965, 1984, 2000, 2019
CviQI GTAC 3 cut(s) 847, 1637, 2103
DpnI GATC 8 cut(s) 14, 18, 237, 564, 1004, 1017, 1389, 2019
DpnII GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
DraI TTTAAA 2 cut(s) 786, 943
EaeI YGGCCR 1 cut(s) 1093
Eam1104I CTCTTC 4 cut(s) 257, 724, 1163, 1495
EarI CTCTTC 4 cut(s) 257, 724, 1163, 1495
Ecl136II GAGCTC 1 cut(s) 1505
Eco130I CCWWGG 2 cut(s) 910, 1106
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 1507
Eco47I GGWCC 3 cut(s) 63, 140, 1173
Eco53kI GAGCTC 1 cut(s) 1505
Eco57I CTGAAG 1 cut(s) 1798
EcoICRI GAGCTC 1 cut(s) 1505
EcoO109I RGGNCCY 1 cut(s) 63
EcoRI GAATTC 4 cut(s) 875, 1408, 1840, 2094
EcoRII CCWGG 5 cut(s) 516, 573, 1175, 1540, 2020
EcoT14I CCWWGG 2 cut(s) 910, 1106
EcoT38I GRGCYC 1 cut(s) 1507
ErhI CCWWGG 2 cut(s) 910, 1106
FalI AAGNNNNNCTT 2 cut(s) 1870, 1902
FaqI GGGAC 1 cut(s) 467
FauNDI CATATG 2 cut(s) 426, 1495
FblI GTMKAC 3 cut(s) 306, 1589, 1710
Fnu4HI GCNGC 9 cut(s) 495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
FriOI GRGCYC 1 cut(s) 1507
Fsp4HI GCNGC 9 cut(s) 495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
FspBI CTAG 5 cut(s) 356, 459, 1052, 1080, 1377
GlaI GCGC 2 cut(s) 614, 950
GluI GCNGC 9 cut(s) 495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
GsuI CTGGAG 4 cut(s) 596, 693, 1491, 2043
HaeIII GGCC 3 cut(s) 538, 573, 1095
HapII CCGG 3 cut(s) 81, 221, 1096
HgaI GACGC 1 cut(s) 213
HhaI GCGC 2 cut(s) 615, 951
Hin1I GRCGYC 1 cut(s) 224
Hin6I GCGC 2 cut(s) 613, 949
HinP1I GCGC 2 cut(s) 613, 949
HincII GTYRAC 1 cut(s) 530
HindII GTYRAC 1 cut(s) 530
HindIII AAGCTT 2 cut(s) 747, 1570
HpaII CCGG 3 cut(s) 81, 221, 1096
HphI GGTGA 4 cut(s) 619, 710, 1448, 1641
Hpy166II GTNNAC 9 cut(s) 307, 530, 652, 847, 1590, 1711, 1805, 1987, 2153
Hpy188III TCNNGA 9 cut(s) 329, 672, 1261, 1280, 1377, 1453, 1472, 1526, 1904
Hpy8I GTNNAC 9 cut(s) 307, 530, 652, 847, 1590, 1711, 1805, 1987, 2153
Hpy99I CGWCG 2 cut(s) 34, 229
HpyAV CCTTC 6 cut(s) 356, 549, 931, 1258, 1450, 1817
HpyCH4III ACNGT 2 cut(s) 1956, 2055
HpyCH4IV ACGT 1 cut(s) 843
HpyF10VI GCNNNNNNNGC 4 cut(s) 202, 616, 1685, 1929
HpySE526I ACGT 1 cut(s) 843
Hsp92I GRCGYC 1 cut(s) 224
HspAI GCGC 2 cut(s) 613, 949
Kzo9I GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
LguI GCTCTTC 2 cut(s) 724, 1495
Lsp1109I GCAGC 8 cut(s) 481, 619, 746, 980, 1099, 1615, 1919, 2096
LweI GCATC 9 cut(s) 364, 382, 667, 805, 955, 1166, 1342, 1587, 2015
MaeI CTAG 5 cut(s) 356, 459, 1052, 1080, 1377
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 1 cut(s) 994
MalI GATC 8 cut(s) 14, 18, 237, 564, 1004, 1017, 1389, 2019
MboI GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
MflI RGATCY 3 cut(s) 562, 1015, 2017
MhlI GDGCHC 3 cut(s) 198, 351, 1507
MlyI GAGTC 3 cut(s) 43, 1362, 1932
MmeI TCCRAC 3 cut(s) 788, 993, 2071
MroXI GAANNNNTTC 1 cut(s) 1479
MseI TTAA 6 cut(s) 273, 785, 840, 942, 1151, 1253
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 81, 221, 1096
MspR9I CCNGG 6 cut(s) 518, 575, 1097, 1177, 1542, 2022
Mva1269I GAATGC 1 cut(s) 1690
MvaI CCWGG 5 cut(s) 518, 575, 1177, 1542, 2022
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 4 cut(s) 202, 616, 1685, 1929
NciI CCSGG 1 cut(s) 1097
NcoI CCATGG 1 cut(s) 1106
NdeI CATATG 2 cut(s) 426, 1495
NdeII GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
NlaIV GGNNCC 8 cut(s) 64, 327, 908, 1017, 1036, 1231, 1537, 1566
NmeAIII GCCGAG 1 cut(s) 284
NspI RCATGY 2 cut(s) 1856, 1973
OliI CACNNNNGTG 1 cut(s) 132
PceI AGGCCT 1 cut(s) 538
PciSI GCTCTTC 2 cut(s) 724, 1495
PctI GAATGC 1 cut(s) 1690
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 7 cut(s) 1247, 1257, 1343, 1439, 1449, 1545, 1766
PflFI GACNNNGTC 1 cut(s) 52
PflMI CCANNNNNTGG 2 cut(s) 636, 2112
PfoI TCCNGGA 2 cut(s) 1175, 2020
PkrI GCNGC 9 cut(s) 496, 609, 612, 736, 970, 1089, 1630, 1934, 2086
PleI GAGTC 3 cut(s) 43, 1361, 1932
PpsI GAGTC 3 cut(s) 43, 1361, 1932
PpuMI RGGWCCY 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 1507
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 5 cut(s) 516, 573, 1175, 1540, 2020
PspGI CCWGG 5 cut(s) 516, 573, 1175, 1540, 2020
PspN4I GGNNCC 8 cut(s) 64, 327, 908, 1017, 1036, 1231, 1537, 1566
PspPI GGNCC 3 cut(s) 63, 140, 1173
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 3 cut(s) 1195, 1937, 2086
PstNI CAGNNNCTG 2 cut(s) 550, 1694
PsuI RGATCY 3 cut(s) 562, 1015, 2017
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 3 cut(s) 848, 1638, 2104
RsaNI GTAC 3 cut(s) 847, 1637, 2103
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 1507
SapI GCTCTTC 2 cut(s) 724, 1495
SaqAI TTAA 6 cut(s) 273, 785, 840, 942, 1151, 1253
SatI GCNGC 9 cut(s) 495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
Sau3AI GATC 8 cut(s) 12, 16, 235, 562, 1002, 1015, 1387, 2017
Sau96I GGNCC 3 cut(s) 63, 140, 1173
SchI GAGTC 3 cut(s) 43, 1362, 1932
ScrFI CCNGG 6 cut(s) 518, 575, 1097, 1177, 1542, 2022
SduI GDGCHC 3 cut(s) 198, 351, 1507
SfaNI GCATC 9 cut(s) 364, 382, 667, 805, 955, 1166, 1342, 1587, 2015
SfcI CTRYAG 4 cut(s) 1191, 1314, 1933, 2082
SinI GGWCC 3 cut(s) 63, 140, 1173
SmiMI CAYNNNNRTG 1 cut(s) 132
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 3 cut(s) 5, 284, 611
SspI AATATT 1 cut(s) 1479
SspMI CTAG 5 cut(s) 356, 459, 1052, 1080, 1377
SstI GAGCTC 1 cut(s) 1507
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 6 cut(s) 516, 573, 1095, 1175, 1540, 2020
StyI CCWWGG 2 cut(s) 910, 1106
TaaI ACNGT 2 cut(s) 1956, 2055
TaiI ACGT 1 cut(s) 846
TaqI TCGA 4 cut(s) 15, 267, 413, 1346
TatI WGTACW 2 cut(s) 846, 1636
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 7 cut(s) 1247, 1257, 1343, 1439, 1449, 1545, 1766
Tru1I TTAA 6 cut(s) 273, 785, 840, 942, 1151, 1253
Tru9I TTAA 6 cut(s) 273, 785, 840, 942, 1151, 1253
TscAI CASTG 7 cut(s) 150, 175, 637, 991, 1012, 1150, 1959
TseI GCWGC 8 cut(s) 494, 607, 734, 968, 1087, 1628, 1932, 2084
TspDTI ATGAA 9 cut(s) 315, 842, 868, 1349, 1697, 1853, 1878, 1905, 2048
TspGWI ACGGA 4 cut(s) 42, 47, 1696, 1822
TspRI CASTG 7 cut(s) 150, 175, 637, 991, 1012, 1150, 1959
Tth111I GACNNNGTC 1 cut(s) 52
Van91I CCANNNNNTGG 2 cut(s) 636, 2112
VpaK11BI GGWCC 3 cut(s) 63, 140, 1173
XapI RAATTY 8 cut(s) 341, 875, 896, 1205, 1284, 1408, 1840, 2094
XbaI TCTAGA 1 cut(s) 1376
XceI RCATGY 2 cut(s) 1856, 1973
XcmI CCANNNNNNNNNTGG 2 cut(s) 287, 1150
XmiI GTMKAC 3 cut(s) 306, 1589, 1710
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 5 cut(s) 356, 459, 1052, 1080, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.