Rmu_co8205828.1_g000001

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8205828.1
OG0000112
Physical Location & Seq
Reverse (-)
1 .. 642
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8205828.1_g000001.1.cds

Sequence Viewer

Length: 596 bp
atggagagcactcctatttggtctacttatgtgtcgcggtctgttcaaaatgttaacacaagcacttcatctgcacagcttttagatacaggaaatttagttgtgttccaggatgataaaaatgaaatctttatatggcaaagttttgatcatcctatagatactttaattccaggtatgaaagttggggtgaattggaaaactgggctagaatgggctttaacatcttggaagtcacaagatgaccctggaactggggactatacctataggctaagttcagatcataatgcatttccccaattttttatgtataaaggtttgagtaagtattggcgaagtgatccaggcccagcgcctactttggtcagtaatgaagatgaaacttattatttcatgaatgaaaccaatgcaattacaagaataacagtgactgatcctgccttagagcggcttacgtgggataatggtggccttcaatggaaggaagaattctctgcaccgaagtcccggtgtgacaggtatggacagtgtggtgccaacagcagatgtagccctgacaatgttaatctgtttgagtgtgactgtttgccagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

199

Amino Acids

22.58

Weight (kDa)

4.57

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 23
AccII CGCG 1 cut(s) 37
AciI CCGC 2 cut(s) 37, 451
AclWI GGATC 2 cut(s) 338, 431
AcsI RAATTY 2 cut(s) 94, 491
AfiI CCNNNNNNNGG 2 cut(s) 254, 450
AgsI TTSAA 2 cut(s) 47, 479
AjnI CCWGG 4 cut(s) 108, 172, 247, 346
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 2 cut(s) 338, 431
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 349, 472
ApoI RAATTY 2 cut(s) 94, 491
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 202
BanI GGYRCC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 11
BciT130I CCWGG 5 cut(s) 110, 174, 249, 348, 594
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 1 cut(s) 511
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 2 cut(s) 156, 268
BfoI RGCGCY 1 cut(s) 359
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 6 cut(s) 110, 174, 249, 348, 511, 594
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 6 cut(s) 110, 174, 249, 348, 511, 594
BmrI ACTGGG 2 cut(s) 213, 264
BmuI ACTGGG 2 cut(s) 213, 264
BpuMI CCSGG 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 450
Bse1I ACTGG 2 cut(s) 208, 259
BseBI CCWGG 5 cut(s) 110, 174, 249, 348, 594
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 2 cut(s) 118, 151
BseLI CCNNNNNNNGG 2 cut(s) 254, 450
BseNI ACTGG 2 cut(s) 208, 259
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 2 cut(s) 57, 483
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 351, 474
BshNI GGYRCC 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 511
BslFI GGGAC 2 cut(s) 272, 493
BslI CCNNNNNNNGG 2 cut(s) 254, 450
BsmFI GGGAC 2 cut(s) 272, 493
BsnI GGCC 2 cut(s) 351, 474
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 148, 283, 343, 436
BspACI CCGC 2 cut(s) 37, 451
BspANI GGCC 2 cut(s) 351, 474
BspFNI CGCG 1 cut(s) 37
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 538
BspPI GGATC 2 cut(s) 338, 431
BspT107I GGYRCC 1 cut(s) 536
BsrBI CCGCTC 1 cut(s) 451
BsrI ACTGG 2 cut(s) 208, 259
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 4 cut(s) 148, 283, 343, 436
Bst2UI CCWGG 5 cut(s) 110, 174, 249, 348, 594
Bst4CI ACNGT 3 cut(s) 430, 531, 587
BstBAI YACGTR 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 275, 445
BstF5I GGATG 2 cut(s) 118, 151
BstFNI CGCG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 4 cut(s) 151, 286, 346, 439
BstMBI GATC 4 cut(s) 148, 283, 343, 436
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNI CCWGG 5 cut(s) 110, 174, 249, 348, 594
BstSCI CCNGG 5 cut(s) 108, 172, 247, 346, 509
BstSFI CTRYAG 2 cut(s) 156, 268
BstUI CGCG 1 cut(s) 37
BsuRI GGCC 2 cut(s) 351, 474
BtsCI GGATG 2 cut(s) 118, 151
BtsIMutI CAGTG 2 cut(s) 435, 536
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 396
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 1 cut(s) 397
CviJI RGCY 8 cut(s) 79, 208, 218, 274, 351, 454, 474, 555
CviKI_1 RGCY 8 cut(s) 79, 208, 218, 274, 351, 454, 474, 555
DdeI CTNAG 2 cut(s) 275, 445
DpnI GATC 4 cut(s) 150, 285, 345, 438
DpnII GATC 4 cut(s) 148, 283, 343, 436
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 4 cut(s) 108, 172, 247, 346
EcoT22I ATGCAT 1 cut(s) 295
FaeI CATG 1 cut(s) 400
FaqI GGGAC 2 cut(s) 272, 493
FatI CATG 1 cut(s) 396
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 2 cut(s) 125, 138
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 2 cut(s) 351, 474
HapII CCGG 1 cut(s) 511
HhaI GCGC 1 cut(s) 358
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 511
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 24, 55
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 2 cut(s) 24, 55
HpyAV CCTTC 2 cut(s) 478, 485
HpyCH4III ACNGT 3 cut(s) 430, 531, 587
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 74, 293, 413, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpyF3I CTNAG 2 cut(s) 275, 445
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 148, 283, 343, 436
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 4 cut(s) 234, 430, 515, 581
MalI GATC 4 cut(s) 150, 285, 345, 438
MbiI CCGCTC 1 cut(s) 451
MboI GATC 4 cut(s) 148, 283, 343, 436
MboII GAAGA 2 cut(s) 389, 500
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 6 cut(s) 94, 168, 193, 302, 414, 491
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 4 cut(s) 54, 167, 221, 567
MspI CCGG 1 cut(s) 511
MspR9I CCNGG 6 cut(s) 110, 174, 249, 348, 511, 594
MvaI CCWGG 5 cut(s) 110, 174, 249, 348, 594
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 552
NciI CCSGG 1 cut(s) 511
NdeII GATC 4 cut(s) 148, 283, 343, 436
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 4 cut(s) 234, 430, 515, 581
NsiI ATGCAT 1 cut(s) 295
PagI TCATGA 1 cut(s) 396
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 453
Ppu21I YACGTR 1 cut(s) 459
Psp6I CCWGG 4 cut(s) 108, 172, 247, 346
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 4 cut(s) 108, 172, 247, 346
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 434
SaqAI TTAA 4 cut(s) 54, 167, 221, 567
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 4 cut(s) 148, 283, 343, 436
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 6 cut(s) 110, 174, 249, 348, 511, 594
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 81, 178, 269, 322, 461, 524
SfcI CTRYAG 2 cut(s) 156, 268
Sse9I AATT 6 cut(s) 94, 168, 193, 302, 414, 491
SsiI CCGC 2 cut(s) 37, 451
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 5 cut(s) 108, 172, 247, 346, 509
TaaI ACNGT 3 cut(s) 430, 531, 587
TaiI ACGT 1 cut(s) 461
TasI AATT 6 cut(s) 94, 168, 193, 302, 414, 491
TauI GCSGC 1 cut(s) 454
Tru1I TTAA 4 cut(s) 54, 167, 221, 567
Tru9I TTAA 4 cut(s) 54, 167, 221, 567
TscAI CASTG 2 cut(s) 435, 536
TseFI GTSAC 4 cut(s) 234, 430, 515, 581
Tsp45I GTSAC 4 cut(s) 234, 430, 515, 581
TspDTI ATGAA 8 cut(s) 57, 138, 194, 385, 390, 396, 413, 417
TspRI CASTG 2 cut(s) 435, 536
XapI RAATTY 2 cut(s) 94, 491
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.