Rmu_sc0009296.1_g000011

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009296.1
OG0000112
Physical Location & Seq
Forward (+)
32919 .. 33719
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009296.1_g000011.1.cds

Sequence Viewer

Length: 801 bp
atgttattgaaatctttgcttctcttcctgctcttccaattttgcacttgcagggacaccatcagatggaatgaacaaccattgaaggatattgatggtgaagttttggtatccaaagaaagcaactttgatttgggtttcttcagccccggcgattctagccaccagtacattggtatttggtattctcaatctaaaatatctgcaaaaacagtggtgtggatcgcaaacagaggcagccccatcaatgatacttctggagttctcaaaatgaacaggtatggagaattagctctttatgcttataacatggagaacattcctatatggtccacaaatgtgtcacagtcggtccaaaacacagacaccttatatagatatgtacagcttttagatactggaaacttagttgtgttccgggatggtagaaatggaagcttgattttgtggcaaagttttgattatcctacagatactctaatcccaggtatgaaatctgggttgaaatggaaaaaagggctagattgccatttaacatcttggaagtcacaagatgaccctggaaagggggactatgcctatagggtcaatccgaatcacaatgctactctaaaatattttgtctacaagggtttcactaagtattgccgaatggatgctgggccatggcctaattttgttagtaatgccaacgaaatgtatagtacctttccttataacagcaatgatatttcaatagtaaggctgaaggatcccgggttacttcagcacctaatatggaatgatgctgaccatcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

266

Amino Acids

30.56

Weight (kDa)

6.95

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 306, 717
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 1 cut(s) 624
AclWI GGATC 3 cut(s) 230, 746, 759
AcuI CTGAAG 3 cut(s) 127, 749, 767
AfaI GTAC 3 cut(s) 170, 384, 706
AfiI CCNNNNNNNGG 3 cut(s) 66, 565, 566
AgsI TTSAA 4 cut(s) 10, 85, 505, 735
AjnI CCWGG 2 cut(s) 484, 559
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 3 cut(s) 293, 388, 438
AluI AGCT 3 cut(s) 293, 388, 438
AlwI GGATC 3 cut(s) 230, 746, 759
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 2 cut(s) 662, 668
ApeKI GCWGC 1 cut(s) 237
AspS9I GGNCC 3 cut(s) 330, 352, 662
AsuC2I CCSGG 4 cut(s) 150, 419, 756, 757
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 755
AvaII GGWCC 2 cut(s) 330, 352
BamHI GGATCC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 249
BccI CCATC 5 cut(s) 60, 68, 89, 251, 416
BciT130I CCWGG 2 cut(s) 486, 561
BciVI GTATCC 1 cut(s) 121
BcnI CCSGG 4 cut(s) 150, 419, 756, 757
BfaI CTAG 2 cut(s) 159, 521
BfmI CTRYAG 2 cut(s) 468, 580
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 6 cut(s) 150, 419, 486, 561, 756, 757
Bme18I GGWCC 2 cut(s) 330, 352
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 3 cut(s) 330, 352, 662
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 6 cut(s) 150, 419, 486, 561, 756, 757
BmsI GCATC 2 cut(s) 646, 775
BpmI CTGGAG 1 cut(s) 279
BpuMI CCSGG 4 cut(s) 150, 419, 756, 757
BsaJI CCNNGG 5 cut(s) 148, 484, 559, 665, 755
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 565, 566
Bse1I ACTGG 2 cut(s) 166, 403
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 2 cut(s) 486, 561
BseDI CCNNGG 5 cut(s) 148, 484, 559, 665, 755
BseGI GGATG 2 cut(s) 427, 661
BseLI CCNNNNNNNGG 3 cut(s) 66, 565, 566
BseMI GCAATG 1 cut(s) 730
BseNI ACTGG 2 cut(s) 166, 403
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 659
BshFI GGCC 2 cut(s) 664, 670
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 3 cut(s) 150, 418, 756
BslFI GGGAC 2 cut(s) 68, 584
BslI CCNNNNNNNGG 3 cut(s) 66, 565, 566
BsmFI GGGAC 2 cut(s) 68, 584
BsnI GGCC 2 cut(s) 664, 670
BsoBI CYCGRG 1 cut(s) 755
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 2 cut(s) 222, 751
Bsp19I CCATGG 1 cut(s) 665
BspANI GGCC 2 cut(s) 664, 670
BspLI GGNNCC 1 cut(s) 753
BspPI GGATC 3 cut(s) 230, 746, 759
BspQI GCTCTTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 2 cut(s) 166, 403
BssECI CCNNGG 5 cut(s) 148, 484, 559, 665, 755
BssMI GATC 2 cut(s) 222, 751
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 2 cut(s) 486, 561
Bst4CI ACNGT 2 cut(s) 214, 348
Bst6I CTCTTC 2 cut(s) 29, 38
BstAUI TGTACA 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 406, 639
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 2 cut(s) 427, 661
BstKTI GATC 2 cut(s) 225, 754
BstMBI GATC 2 cut(s) 222, 751
BstMWI GCNNNNNNNGC 2 cut(s) 159, 299
BstNI CCWGG 2 cut(s) 486, 561
BstSCI CCNGG 6 cut(s) 148, 417, 484, 559, 754, 755
BstSFI CTRYAG 2 cut(s) 468, 580
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 751
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 664, 670
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 2 cut(s) 427, 661
BtsIMutI CAGTG 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 330, 352, 662
Cfr9I CCCGGG 1 cut(s) 755
Csp6I GTAC 3 cut(s) 169, 383, 705
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 2 cut(s) 310, 666
CviQI GTAC 3 cut(s) 169, 383, 705
DdeI CTNAG 2 cut(s) 406, 639
DpnI GATC 2 cut(s) 224, 753
DpnII GATC 2 cut(s) 222, 751
Eam1104I CTCTTC 2 cut(s) 29, 38
EarI CTCTTC 2 cut(s) 29, 38
Eco130I CCWWGG 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 330, 352
Eco57I CTGAAG 3 cut(s) 127, 749, 767
Eco88I CYCGRG 1 cut(s) 755
EcoRII CCWGG 2 cut(s) 484, 559
EcoT14I CCWWGG 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 2 cut(s) 313, 669
FaqI GGGAC 2 cut(s) 68, 584
FatI CATG 2 cut(s) 309, 665
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 2 cut(s) 434, 668
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 159, 521
GluI GCNGC 1 cut(s) 238
GsaI CCCAGC 1 cut(s) 663
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 664, 670
HapII CCGG 3 cut(s) 150, 418, 756
Hin1II CATG 2 cut(s) 313, 669
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 2 cut(s) 155, 595
HpaII CCGG 3 cut(s) 150, 418, 756
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 333, 625
Hpy188I TCNGA 2 cut(s) 65, 594
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 333, 625
HpyAV CCTTC 2 cut(s) 79, 742
HpyCH4III ACNGT 2 cut(s) 214, 348
HpyCH4V TGCA 3 cut(s) 45, 51, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 299
HpyF3I CTNAG 2 cut(s) 406, 639
Hsp92II CATG 2 cut(s) 313, 669
Kzo9I GATC 2 cut(s) 222, 751
LguI GCTCTTC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 2 cut(s) 646, 775
MaeI CTAG 2 cut(s) 159, 521
MaeIII GTNAC 3 cut(s) 342, 546, 759
MalI GATC 2 cut(s) 224, 753
MboI GATC 2 cut(s) 222, 751
MboII GAAGA 3 cut(s) 16, 25, 133
MflI RGATCY 1 cut(s) 751
MluCI AATT 3 cut(s) 38, 287, 673
MnlI CCTC 1 cut(s) 227
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 338
MspI CCGG 3 cut(s) 150, 418, 756
MspR9I CCNGG 6 cut(s) 150, 419, 486, 561, 756, 757
MvaI CCWGG 2 cut(s) 486, 561
MwoI GCNNNNNNNGC 2 cut(s) 159, 299
NciI CCSGG 4 cut(s) 150, 419, 756, 757
NcoI CCATGG 1 cut(s) 665
NdeII GATC 2 cut(s) 222, 751
NlaIII CATG 2 cut(s) 313, 669
NlaIV GGNNCC 1 cut(s) 753
NmuCI GTSAC 2 cut(s) 342, 546
OliI CACNNNNGTG 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 155, 595
PflMI CCANNNNNTGG 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 1 cut(s) 239
PsiI TTATAA 2 cut(s) 306, 717
Psp6I CCWGG 2 cut(s) 484, 559
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 2 cut(s) 484, 559
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 3 cut(s) 330, 352, 662
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 3 cut(s) 170, 384, 706
RsaNI GTAC 3 cut(s) 169, 383, 705
RseI CAYNNNNRTG 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 2 cut(s) 222, 751
Sau96I GGNCC 3 cut(s) 330, 352, 662
ScrFI CCNGG 6 cut(s) 150, 419, 486, 561, 756, 757
SetI ASST 8 cut(s) 281, 295, 371, 390, 440, 490, 710, 774
SfaNI GCATC 2 cut(s) 646, 775
SfcI CTRYAG 2 cut(s) 468, 580
SinI GGWCC 2 cut(s) 330, 352
SmaI CCCGGG 1 cut(s) 757
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 3 cut(s) 38, 287, 673
SspI AATATT 1 cut(s) 617
SspMI CTAG 2 cut(s) 159, 521
StyD4I CCNGG 6 cut(s) 148, 417, 484, 559, 754, 755
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 2 cut(s) 214, 348
TaqII GACCGA 1 cut(s) 340
TasI AATT 3 cut(s) 38, 287, 673
TatI WGTACW 2 cut(s) 168, 382
TfiI GAWTC 2 cut(s) 155, 595
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 342, 546
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 2 cut(s) 342, 546
TspDTI ATGAA 3 cut(s) 87, 287, 506
TspMI CCCGGG 1 cut(s) 755
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 330, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmaI CCCGGG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 2 cut(s) 159, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.