RchiOBHm_Chr5g0046231

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000112
Physical Location & Seq
Forward (+)
42287896 .. 42290379
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32424

Sequence Viewer

Length: 1728 bp
ATGAATGAAACCAATGCAGTTGCAAGAATAACAGTGACTGATTCTGCCTTAAAGCGCCTTATATGGGATGGTGGTAGCCTTCAATGGAAGGAAGATTTCTCTGCACCGAAGTCCCGGTGTGACAGGTACGGACAGTGTGGTGCCAACAGCAGATGCAACCCTGATAATGTTAATCTGTTTGAGTGTGACTGTTTGCCAGGGTATGTGCCTAATTCTATAAGTGATTGGAATCAGAAAAATGGTTCAGGTGGATGTGTGAGTAATCGACTTGGTTTGTTGAAGTGTGGAGATGGAGACGGGTTTATAAAGGTGGCAAGAGTTAAATATCCAGACACAACGATAGCAGCATCATTAAAATCAGGTATGAGTGGCAAAGAGTGTGCGCAGGAGTGCCTAAGAAATTGTTCTTGCACTGCATATTTGAGCGATGAAAATGAAGGGATTGTTGATTGCTTGACATGGTATGATGACTTGATGGACATTTTAGTGTACACAGAGATTGGAAGAGATCTCTATGTTCGTGTGAATGCAACTGTCTTAGCGGCAAATGCCGGAAGATCACAAGGTTTGTGGGAAAGGAGGGGTATGCTGGCTATTCCAATACTGTGCACTGCGCTAGCATTGGTACTAATCATTATGCTTGCATGGAAGTGGCGTAAGAAGAACAGGAACACAAGAGGCATAGACTTTGTGGAGGCAGAGGAGCTTGAGGAAACTCAGAGACACCCCGAATTGCAATTTTTCGATCTTGACACAATAACAGCAGCCACAGACCACTTCTCTCATGTCAATGAACTTGGCCGCGGTGGCTTTGGCTCTGTTTATATGGGTCAGCTATCAAATGAACAGAAAGTTGCTGTGAAAAGATTGTCCAAAACTTCAGGACAAGGGATTGAAGAATTTAAGAATGAAGTTGCACTTATAGCAAGACTTCAACACAGGAACCTTGTGAAACTTTTAGGCTGTTGTATAAAGGGAGAAGAAAGGATGTTAGTCCTAGAATACATGCCTAACAAAGGCTTGGACTCCTTTCTGTTTGATAAGACAAGACGGTCCTTCTTGGATTGGGAAAAGCGTTTTGAAATTATCAACGGGATTGCTCGTGGGATTCTGTATCTTCACCAAGACTCAAGATTGAGGATTATCCATAGAGATCTAAAAACTAGTAATGTTCTACTAGATGATGAGATGAACCCAAAAATTTCTGATTTTGGCATGGCTAGAATATTCCATGGAGACCAACTCCAAGATAAGACAAGCCGAATTGTCGGAACATATGGCTACATGGCACCAGAGTACGCAGTATTTGGGAGATTTTCCACAAAGTCTGATGTCTTTAGTTTTGGGATCATAATGTTGGAGATTGTAAGTGGCCAGAAAAACAATGGTTCTGATCCGGAGGATCCTTCCGTGAACTTAATAGGACATGTATGGGAGCTCTGGAGAGAAGGCAGAGCCTTGGATATTGTGGATTCAACACTGAAGTCATATCATCCAAATGAAGCCATGAGATGCATACAAGTTGCTCTCTTGTGTGTACAAGAAGATCCGATGGACCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGATGAAGCATCTCCTCCATTGCCAAAGCAGCCGGCAGTTGTTTACAGAATAAATTCCGGCACTGATGTTGATCCATTACTTTCAAACATATCTTTTTCTAGAAATGACTTGACAGTAACTACAATGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

575

Amino Acids

64.49

Weight (kDa)

5.58

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 4 - 71 1.6e-11 S-locus glycoprotein domain
PAN_2 PF08276 95 - 161 4e-17 PAN-like domain
Pkinase PF00069 261 - 526 3.8e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 263 - 528 3.8e-52 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AasI GACNNNNNNGTC 1 cut(s) 1051
Acc16I TGCGCA 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 1570
AccB1I GGYRCC 2 cut(s) 140, 1288
AccII CGCG 1 cut(s) 804
AccIII TCCGGA 1 cut(s) 1396
AciI CCGC 3 cut(s) 542, 802, 804
AclWI GGATC 6 cut(s) 1355, 1388, 1397, 1410, 1541, 1658
AcoI YGGCCR 2 cut(s) 799, 1372
AcsI RAATTY 3 cut(s) 899, 1200, 1645
AcuI CTGAAG 2 cut(s) 864, 1502
AfaI GTAC 5 cut(s) 128, 491, 627, 1298, 1539
AfiI CCNNNNNNNGG 2 cut(s) 64, 1016
AflIII ACRYGT 1 cut(s) 1426
AgsI TTSAA 7 cut(s) 83, 280, 896, 935, 1082, 1476, 1677
AhlI ACTAGT 1 cut(s) 1163
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 4 cut(s) 706, 835, 1438, 1724
AluI AGCT 4 cut(s) 706, 835, 1438, 1724
Alw21I GWGCWC 2 cut(s) 611, 1440
Alw26I GTCTC 3 cut(s) 288, 715, 1230
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 6 cut(s) 1355, 1388, 1397, 1410, 1541, 1658
AlwNI CAGNNNCTG 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 1396
AoxI GGCC 2 cut(s) 799, 1372
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 3 cut(s) 344, 764, 1621
ApoI RAATTY 3 cut(s) 899, 1200, 1645
Asp700I GAANNNNTTC 2 cut(s) 403, 1645
AspLEI GCGC 3 cut(s) 57, 385, 616
AspS9I GGNCC 2 cut(s) 1053, 1555
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 1112
AsuNHI GCTAGC 1 cut(s) 616
AvaII GGWCC 2 cut(s) 1053, 1555
BaeGI GKGCMC 1 cut(s) 611
BalI TGGCCA 1 cut(s) 1374
BamHI GGATCC 1 cut(s) 1402
BanI GGYRCC 2 cut(s) 140, 1288
BanII GRGCYC 1 cut(s) 1440
BauI CACGAG 1 cut(s) 1101
Bbv12I GWGCWC 2 cut(s) 611, 1440
BbvI GCAGC 3 cut(s) 356, 776, 1633
BccI CCATC 4 cut(s) 62, 284, 469, 1546
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 288, 715, 1230
BcuI ACTAGT 1 cut(s) 1163
BfaI CTAG 6 cut(s) 617, 998, 1164, 1178, 1221, 1692
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 1570
BglI GCCNNNNNGGC 1 cut(s) 807
BglII AGATCT 2 cut(s) 508, 1153
BisI GCNGC 5 cut(s) 345, 543, 765, 802, 1622
BlsI GCNGC 5 cut(s) 346, 544, 766, 803, 1623
Bme1390I CCNGG 2 cut(s) 115, 198
Bme18I GGWCC 2 cut(s) 1053, 1555
BmgT120I GGNCC 2 cut(s) 1053, 1555
BmiI GGNNCC 4 cut(s) 142, 944, 1290, 1404
BmrFI CCNGG 2 cut(s) 115, 198
BmsI GCATC 4 cut(s) 143, 356, 1502, 1610
BmtI GCTAGC 1 cut(s) 620
BplI GAGNNNNNCTC 2 cut(s) 1227, 1259
BpmI CTGGAG 1 cut(s) 1462
BpuEI CTTGAG 2 cut(s) 728, 1114
BpuMI CCSGG 1 cut(s) 115
BsaBI GATNNNNATC 2 cut(s) 228, 1662
BsaI GGTCTC 1 cut(s) 1230
BsaJI CCNNGG 4 cut(s) 197, 802, 1231, 1458
BsaWI WCCGGW 1 cut(s) 1396
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 1016
Bse118I RCCGGY 1 cut(s) 1624
Bse3DI GCAATG 1 cut(s) 1610
Bse8I GATNNNNATC 2 cut(s) 228, 1662
BseAI TCCGGA 1 cut(s) 1396
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 4 cut(s) 197, 802, 1231, 1458
BseGI GGATG 4 cut(s) 73, 257, 993, 1492
BseJI GATNNNNATC 2 cut(s) 228, 1662
BseLI CCNNNNNNNGG 2 cut(s) 64, 1016
BseMI GCAATG 1 cut(s) 1610
BseMII CTCAG 1 cut(s) 731
BseRI GAGGAG 2 cut(s) 716, 1596
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 3 cut(s) 356, 776, 1633
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 804
BshFI GGCC 2 cut(s) 801, 1374
BshNI GGYRCC 2 cut(s) 140, 1288
BsiHKAI GWGCWC 2 cut(s) 611, 1440
BsiSI CCGG 5 cut(s) 115, 552, 1397, 1625, 1650
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 64, 1016
BsmAI GTCTC 3 cut(s) 288, 715, 1230
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 2 cut(s) 801, 1374
Bso31I GGTCTC 1 cut(s) 1230
Bsp1286I GDGCHC 2 cut(s) 611, 1440
Bsp13I TCCGGA 1 cut(s) 1396
Bsp1407I TGTACA 2 cut(s) 489, 1537
Bsp143I GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
Bsp19I CCATGG 1 cut(s) 1231
BspACI CCGC 3 cut(s) 542, 802, 804
BspANI GGCC 2 cut(s) 801, 1374
BspCNI CTCAG 1 cut(s) 730
BspEI TCCGGA 1 cut(s) 1396
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 4 cut(s) 142, 944, 1290, 1404
BspMI ACCTGC 1 cut(s) 1570
BspOI GCTAGC 1 cut(s) 620
BspPI GGATC 6 cut(s) 1355, 1388, 1397, 1410, 1541, 1658
BspT107I GGYRCC 2 cut(s) 140, 1288
BspTNI GGTCTC 1 cut(s) 1230
BsrDI GCAATG 1 cut(s) 1610
BsrFI RCCGGY 1 cut(s) 1624
BsrGI TGTACA 2 cut(s) 489, 1537
BssAI RCCGGY 1 cut(s) 1624
BssECI CCNNGG 4 cut(s) 197, 802, 1231, 1458
BssMI GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
BssSI CACGAG 1 cut(s) 1101
BssT1I CCWWGG 2 cut(s) 1231, 1458
Bst2BI CACGAG 1 cut(s) 1101
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 7 cut(s) 34, 135, 191, 535, 606, 1053, 1708
Bst6I CTCTTC 1 cut(s) 499
BstAUI TGTACA 2 cut(s) 489, 1537
BstC8I GCNNGC 4 cut(s) 591, 618, 642, 1626
BstDEI CTNAG 3 cut(s) 395, 538, 717
BstDSI CCRYGG 2 cut(s) 802, 1231
BstENI CCTNNNNNAGG 1 cut(s) 1014
BstF5I GGATG 4 cut(s) 73, 257, 993, 1492
BstFNI CGCG 1 cut(s) 804
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 3 cut(s) 57, 385, 616
BstKTI GATC 9 cut(s) 511, 560, 748, 1156, 1350, 1396, 1405, 1549, 1666
BstMAI GTCTC 3 cut(s) 288, 715, 1230
BstMBI GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
BstMWI GCNNNNNNNGC 5 cut(s) 548, 807, 923, 1571, 1621
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 2 cut(s) 1009, 1430
BstSCI CCNGG 2 cut(s) 113, 196
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 3 cut(s) 356, 776, 1633
BstX2I RGATCY 4 cut(s) 508, 1153, 1402, 1546
BstYI RGATCY 4 cut(s) 508, 1153, 1402, 1546
BsuRI GGCC 2 cut(s) 801, 1374
BtgI CCRYGG 2 cut(s) 802, 1231
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 4 cut(s) 73, 257, 993, 1492
BtsI GCAGTG 2 cut(s) 411, 609
BtsIMutI CAGTG 6 cut(s) 39, 140, 411, 609, 1478, 1653
BveI ACCTGC 1 cut(s) 1570
Cac8I GCNNGC 4 cut(s) 591, 618, 642, 1626
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 3 cut(s) 57, 385, 616
Cfr10I RCCGGY 1 cut(s) 1624
Cfr13I GGNCC 2 cut(s) 1053, 1555
Cfr42I CCGCGG 1 cut(s) 805
Csp6I GTAC 5 cut(s) 127, 490, 626, 1297, 1538
CspCI CAANNNNNGTGG 2 cut(s) 551, 586
CviQI GTAC 5 cut(s) 127, 490, 626, 1297, 1538
DdeI CTNAG 3 cut(s) 395, 538, 717
DpnI GATC 9 cut(s) 510, 559, 747, 1155, 1349, 1395, 1404, 1548, 1665
DpnII GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
DrdI GACNNNNNNGTC 1 cut(s) 1051
DseDI GACNNNNNNGTC 1 cut(s) 1051
EaeI YGGCCR 2 cut(s) 799, 1372
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 1438
Eco130I CCWWGG 2 cut(s) 1231, 1458
Eco24I GRGCYC 1 cut(s) 1440
Eco31I GGTCTC 1 cut(s) 1230
Eco47I GGWCC 2 cut(s) 1053, 1555
Eco53kI GAGCTC 1 cut(s) 1438
Eco57I CTGAAG 2 cut(s) 864, 1502
EcoICRI GAGCTC 1 cut(s) 1438
EcoNI CCTNNNNNAGG 1 cut(s) 1014
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 1231, 1458
EcoT22I ATGCAT 1 cut(s) 1517
EcoT38I GRGCYC 1 cut(s) 1440
ErhI CCWWGG 2 cut(s) 1231, 1458
Esp3I CGTCTC 1 cut(s) 288
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 1276
Fnu4HI GCNGC 5 cut(s) 345, 543, 765, 802, 1622
FokI GGATG 4 cut(s) 80, 264, 1000, 1479
FriOI GRGCYC 1 cut(s) 1440
Fsp4HI GCNGC 5 cut(s) 345, 543, 765, 802, 1622
FspBI CTAG 6 cut(s) 617, 998, 1164, 1178, 1221, 1692
FspI TGCGCA 1 cut(s) 384
GlaI GCGC 3 cut(s) 56, 384, 615
GluI GCNGC 5 cut(s) 345, 543, 765, 802, 1622
GsuI CTGGAG 1 cut(s) 1462
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 2 cut(s) 801, 1374
HapII CCGG 5 cut(s) 115, 552, 1397, 1625, 1650
HhaI GCGC 3 cut(s) 57, 385, 616
Hin6I GCGC 3 cut(s) 55, 383, 614
HinP1I GCGC 3 cut(s) 55, 383, 614
HindIII AAGCTT 1 cut(s) 1722
HinfI GANTC 6 cut(s) 41, 229, 1025, 1108, 1127, 1472
HpaII CCGG 5 cut(s) 115, 552, 1397, 1625, 1650
HphI GGTGA 1 cut(s) 1112
Hpy166II GTNNAC 6 cut(s) 490, 492, 609, 1414, 1538, 1636
Hpy188I TCNGA 7 cut(s) 234, 720, 1207, 1271, 1330, 1393, 1551
Hpy188III TCNNGA 7 cut(s) 329, 749, 882, 1131, 1397, 1441, 1692
Hpy8I GTNNAC 6 cut(s) 490, 492, 609, 1414, 1538, 1636
HpyAV CCTTC 6 cut(s) 82, 89, 431, 1066, 1416, 1442
HpyCH4III ACNGT 7 cut(s) 34, 135, 191, 535, 606, 1053, 1708
HpyF10VI GCNNNNNNNGC 5 cut(s) 548, 807, 923, 1571, 1621
HpyF3I CTNAG 3 cut(s) 395, 538, 717
HspAI GCGC 3 cut(s) 55, 383, 614
Kpn2I TCCGGA 1 cut(s) 1396
KroI GCCGGC 1 cut(s) 1624
KroNI GCCGGC 1 cut(s) 1626
KspI CCGCGG 1 cut(s) 805
Kzo9I GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
LmnI GCTCC 2 cut(s) 703, 1435
Lsp1109I GCAGC 3 cut(s) 356, 776, 1633
LweI GCATC 4 cut(s) 143, 356, 1502, 1610
MaeI CTAG 6 cut(s) 617, 998, 1164, 1178, 1221, 1692
MaeIII GTNAC 4 cut(s) 34, 119, 185, 1708
MalI GATC 9 cut(s) 510, 559, 747, 1155, 1349, 1395, 1404, 1548, 1665
MboI GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
MboII GAAGA 8 cut(s) 104, 516, 567, 673, 908, 992, 1109, 1556
MflI RGATCY 4 cut(s) 508, 1153, 1402, 1546
MhlI GDGCHC 2 cut(s) 611, 1440
MlsI TGGCCA 1 cut(s) 1374
MluCI AATT 9 cut(s) 211, 400, 731, 737, 899, 1083, 1200, 1263, 1645
MluNI TGGCCA 1 cut(s) 1374
MlyI GAGTC 2 cut(s) 1019, 1121
MmeI TCCRAC 2 cut(s) 1249, 1338
MnlI CCTC 8 cut(s) 573, 671, 688, 694, 703, 1131, 1393, 1617
Mox20I TGGCCA 1 cut(s) 1374
Mph1103I ATGCAT 1 cut(s) 1517
MroI TCCGGA 1 cut(s) 1396
MroNI GCCGGC 1 cut(s) 1624
MroXI GAANNNNTTC 2 cut(s) 403, 1645
MscI TGGCCA 1 cut(s) 1374
MseI TTAA 6 cut(s) 50, 171, 321, 353, 903, 1418
MslI CAYNNNNRTG 4 cut(s) 485, 649, 789, 1497
Msp20I TGGCCA 1 cut(s) 1374
MspA1I CMGCKG 1 cut(s) 804
MspI CCGG 5 cut(s) 115, 552, 1397, 1625, 1650
MspR9I CCNGG 2 cut(s) 115, 198
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 5 cut(s) 548, 807, 923, 1571, 1621
NaeI GCCGGC 1 cut(s) 1626
NciI CCSGG 1 cut(s) 115
NcoI CCATGG 1 cut(s) 1231
NdeI CATATG 1 cut(s) 1276
NdeII GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
NgoMIV GCCGGC 1 cut(s) 1624
NheI GCTAGC 1 cut(s) 616
NlaIV GGNNCC 4 cut(s) 142, 944, 1290, 1404
NmuCI GTSAC 3 cut(s) 34, 119, 185
NsbI TGCGCA 1 cut(s) 384
NsiI ATGCAT 1 cut(s) 1517
NspI RCATGY 2 cut(s) 1009, 1430
PciI ACATGT 1 cut(s) 1426
PctI GAATGC 1 cut(s) 532
PdiI GCCGGC 1 cut(s) 1626
PdmI GAANNNNTTC 2 cut(s) 403, 1645
PfeI GAWTC 4 cut(s) 41, 229, 1108, 1472
PkrI GCNGC 5 cut(s) 346, 544, 766, 803, 1623
PleI GAGTC 2 cut(s) 1019, 1121
PpsI GAGTC 2 cut(s) 1019, 1121
PscI ACATGT 1 cut(s) 1426
PsiI TTATAA 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 1440
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 4 cut(s) 142, 944, 1290, 1404
PspPI GGNCC 2 cut(s) 1053, 1555
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 4 cut(s) 508, 1153, 1402, 1546
RsaI GTAC 5 cut(s) 128, 491, 627, 1298, 1539
RsaNI GTAC 5 cut(s) 127, 490, 626, 1297, 1538
RseI CAYNNNNRTG 4 cut(s) 485, 649, 789, 1497
SacI GAGCTC 1 cut(s) 1440
SacII CCGCGG 1 cut(s) 805
SaqAI TTAA 6 cut(s) 50, 171, 321, 353, 903, 1418
SatI GCNGC 5 cut(s) 345, 543, 765, 802, 1622
Sau3AI GATC 9 cut(s) 508, 557, 745, 1153, 1347, 1393, 1402, 1546, 1663
Sau96I GGNCC 2 cut(s) 1053, 1555
SchI GAGTC 2 cut(s) 1019, 1121
ScrFI CCNGG 2 cut(s) 115, 198
SduI GDGCHC 2 cut(s) 611, 1440
SfaNI GCATC 4 cut(s) 143, 356, 1502, 1610
Sfr303I CCGCGG 1 cut(s) 805
SgrBI CCGCGG 1 cut(s) 805
SinI GGWCC 2 cut(s) 1053, 1555
SmiMI CAYNNNNRTG 4 cut(s) 485, 649, 789, 1497
SmlI CTYRAG 2 cut(s) 707, 1129
SmoI CTYRAG 2 cut(s) 707, 1129
SpeI ACTAGT 1 cut(s) 1163
Sse9I AATT 9 cut(s) 211, 400, 731, 737, 899, 1083, 1200, 1263, 1645
SsiI CCGC 3 cut(s) 542, 802, 804
SspI AATATT 1 cut(s) 1227
SspMI CTAG 6 cut(s) 617, 998, 1164, 1178, 1221, 1692
SstI GAGCTC 1 cut(s) 1440
StyD4I CCNGG 2 cut(s) 113, 196
StyI CCWWGG 2 cut(s) 1231, 1458
TaaI ACNGT 7 cut(s) 34, 135, 191, 535, 606, 1053, 1708
TaqI TCGA 2 cut(s) 265, 744
TaqII GACCGA 1 cut(s) 1572
TasI AATT 9 cut(s) 211, 400, 731, 737, 899, 1083, 1200, 1263, 1645
TatI WGTACW 2 cut(s) 489, 1537
TauI GCSGC 2 cut(s) 545, 804
TfiI GAWTC 4 cut(s) 41, 229, 1108, 1472
Tru1I TTAA 6 cut(s) 50, 171, 321, 353, 903, 1418
Tru9I TTAA 6 cut(s) 50, 171, 321, 353, 903, 1418
TscAI CASTG 6 cut(s) 39, 140, 418, 616, 1485, 1660
TseFI GTSAC 3 cut(s) 34, 119, 185
TseI GCWGC 3 cut(s) 344, 764, 1621
Tsp45I GTSAC 3 cut(s) 34, 119, 185
TspGWI ACGGA 2 cut(s) 144, 1399
TspRI CASTG 6 cut(s) 39, 140, 418, 616, 1485, 1660
VneI GTGCAC 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 1053, 1555
XagI CCTNNNNNAGG 1 cut(s) 1014
XapI RAATTY 3 cut(s) 899, 1200, 1645
XbaI TCTAGA 1 cut(s) 1691
XceI RCATGY 2 cut(s) 1009, 1430
XcmI CCANNNNNNNNNTGG 1 cut(s) 1382
XmnI GAANNNNTTC 2 cut(s) 403, 1645
XspI CTAG 6 cut(s) 617, 998, 1164, 1178, 1221, 1692
Zsp2I ATGCAT 1 cut(s) 1517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.