RchiOBHm_Chr7g0224111

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000112
Physical Location & Seq
Forward (+)
45981410 .. 45982731
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20066

Sequence Viewer

Length: 726 bp
ATGGAATCCATGCCAGTGATTGCTGAAGATGACACAAGACGGTCCTTCTTGGATTGGGAAAAGCGCTCTGAAATTATCAACGGGATTGCTCGTGGGATTTTGTATCTTCACCAAGACTCAAGATTGAGGATCATTATCATCCATAGAGATCTGAAAACTAGTAATATTCTTCTAGATGCTAAGATGAACCCAAGAATTTCTGATTTTGGCATGGCTAGAATATTCCATGGAGACCAATTGCAAGATAAGACGAGGCGAATTGTTGGAACATATGGCTACATGTCACCAGAGTACGCAATATTTGGGAGATTTTCAACGAAATCTGATGTATTTAGTTTTGGGATCATAATGTTGGAGATTGTAAGCGGCCGGAAAAACAATGGTTCTGAACTAGAGGATCCTTCCATGAACTTGATAGGACGTGTTTGGGAGCTATGGGGAGAAGGCAGGGCCTTAGATATTGTTGATTCGACACTGAAGTCATATCAGCCTAATGAAGTCATGAGATGCATACAAGTTGCGCTCTTGTGTGTACAAGAAGATTCAAAGGACCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGGTGAAGCATCTCCTCCATTGCCTAAGCATCTGGCATTTGTTTACAGAAGAGATTCCGACGCTGATGTTGATCCGTTACATGCAAACGGAACTGATTCTATAAATGACTTGACAATAACTACAATGAAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

241

Amino Acids

27.34

Weight (kDa)

5.78

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 13 - 191 1.3e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 193 1.7e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 565
AciI CCGC 1 cut(s) 366
AclWI GGATC 5 cut(s) 137, 350, 392, 405, 653
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 45, 497
AfaI GTAC 2 cut(s) 293, 534
AfeI AGCGCT 1 cut(s) 65
AflIII ACRYGT 2 cut(s) 279, 421
AgsI TTSAA 2 cut(s) 315, 546
AhlI ACTAGT 1 cut(s) 158
AjiI CACGTC 1 cut(s) 422
AluBI AGCT 2 cut(s) 433, 719
AluI AGCT 2 cut(s) 433, 719
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 5 cut(s) 137, 350, 392, 405, 653
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 2 cut(s) 367, 450
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 2 cut(s) 640, 682
AspLEI GCGC 2 cut(s) 66, 523
AspS9I GGNCC 3 cut(s) 42, 450, 550
AsuHPI GGTGA 3 cut(s) 101, 276, 602
AvaII GGWCC 2 cut(s) 42, 550
BamHI GGATCC 1 cut(s) 397
BauI CACGAG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 225
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 4 cut(s) 159, 173, 216, 392
BfoI RGCGCY 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 565
BglII AGATCT 1 cut(s) 148
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme18I GGWCC 2 cut(s) 42, 550
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 3 cut(s) 42, 450, 550
BmiI GGNNCC 1 cut(s) 399
BmsI GCATC 4 cut(s) 166, 497, 605, 625
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 103
BsaBI GATNNNNATC 2 cut(s) 134, 657
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 605
Bse8I GATNNNNATC 2 cut(s) 134, 657
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 138
BseJI GATNNNNATC 2 cut(s) 134, 657
BseMI GCAATG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 591
BseX3I CGGCCG 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 2 cut(s) 369, 452
BsiEI CGRYCG 1 cut(s) 370
BsiSI CCGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 2 cut(s) 369, 452
Bso31I GGTCTC 1 cut(s) 225
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 5 cut(s) 129, 148, 342, 397, 658
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 369, 452
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 5 cut(s) 137, 350, 392, 405, 653
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 5 cut(s) 129, 148, 342, 397, 658
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 631
BstAUI TGTACA 1 cut(s) 532
BstDEI CTNAG 3 cut(s) 180, 454, 612
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 2 cut(s) 66, 523
BstKTI GATC 5 cut(s) 132, 151, 345, 400, 661
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 5 cut(s) 129, 148, 342, 397, 658
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 283, 671
BstX2I RGATCY 2 cut(s) 148, 397
BstYI RGATCY 2 cut(s) 148, 397
BstZI CGGCCG 1 cut(s) 367
BsuRI GGCC 2 cut(s) 369, 452
BtgI CCRYGG 1 cut(s) 226
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 21, 473
BveI ACCTGC 1 cut(s) 565
CciI TCATGA 1 cut(s) 501
CfoI GCGC 2 cut(s) 66, 523
Cfr13I GGNCC 3 cut(s) 42, 450, 550
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 292, 533
CviAII CATG 9 cut(s) 10, 211, 227, 280, 406, 502, 562, 580, 668
CviJI RGCY 8 cut(s) 215, 276, 369, 433, 452, 490, 569, 719
CviKI_1 RGCY 8 cut(s) 215, 276, 369, 433, 452, 490, 569, 719
CviQI GTAC 2 cut(s) 292, 533
DdeI CTNAG 3 cut(s) 180, 454, 612
DpnI GATC 5 cut(s) 131, 150, 344, 399, 660
DpnII GATC 5 cut(s) 129, 148, 342, 397, 658
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 367
EagI CGGCCG 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
EclXI CGGCCG 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 42, 550
Eco47III AGCGCT 1 cut(s) 65
Eco52I CGGCCG 1 cut(s) 367
Eco57I CTGAAG 2 cut(s) 45, 497
EcoO109I RGGNCCY 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 9 cut(s) 13, 214, 230, 283, 409, 505, 565, 583, 671
FatI CATG 9 cut(s) 9, 210, 226, 279, 405, 501, 561, 579, 667
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 4 cut(s) 159, 173, 216, 392
GlaI GCGC 2 cut(s) 65, 522
GluI GCNGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 2 cut(s) 369, 452
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 656
HhaI GCGC 2 cut(s) 66, 523
Hin1II CATG 9 cut(s) 13, 214, 230, 283, 409, 505, 565, 583, 671
Hin6I GCGC 2 cut(s) 64, 521
HinP1I GCGC 2 cut(s) 64, 521
HinfI GANTC 6 cut(s) 5, 116, 467, 542, 641, 683
HpaII CCGG 1 cut(s) 370
HphI GGTGA 3 cut(s) 101, 276, 602
Hpy166II GTNNAC 2 cut(s) 533, 631
Hpy188I TCNGA 6 cut(s) 70, 153, 202, 325, 388, 646
Hpy188III TCNNGA 3 cut(s) 120, 173, 502
Hpy8I GTNNAC 2 cut(s) 533, 631
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 3 cut(s) 55, 411, 437
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 241, 510, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 3 cut(s) 180, 454, 612
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 9 cut(s) 13, 214, 230, 283, 409, 505, 565, 583, 671
HspAI GCGC 2 cut(s) 64, 521
Kzo9I GATC 5 cut(s) 129, 148, 342, 397, 658
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 6 cut(s) 27, 300, 383, 433, 570, 605
LweI GCATC 4 cut(s) 166, 497, 605, 625
MaeI CTAG 4 cut(s) 159, 173, 216, 392
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 282, 663
MalI GATC 5 cut(s) 131, 150, 344, 399, 660
MboI GATC 5 cut(s) 129, 148, 342, 397, 658
MboII GAAGA 5 cut(s) 38, 98, 161, 551, 648
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 2 cut(s) 148, 397
MluCI AATT 4 cut(s) 72, 195, 236, 258
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 3 cut(s) 244, 333, 669
MnlI CCTC 4 cut(s) 120, 246, 388, 612
Mph1103I ATGCAT 1 cut(s) 512
MroXI GAANNNNTTC 2 cut(s) 640, 682
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 1 cut(s) 370
MunI CAATTG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 566
NcoI CCATGG 1 cut(s) 226
NdeI CATATG 1 cut(s) 271
NdeII GATC 5 cut(s) 129, 148, 342, 397, 658
NlaIII CATG 9 cut(s) 13, 214, 230, 283, 409, 505, 565, 583, 671
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 512
NspI RCATGY 2 cut(s) 283, 671
PagI TCATGA 1 cut(s) 501
PciI ACATGT 1 cut(s) 279
PdmI GAANNNNTTC 2 cut(s) 640, 682
PfeI GAWTC 5 cut(s) 5, 467, 542, 641, 683
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PscI ACATGT 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 3 cut(s) 42, 450, 550
PsuI RGATCY 2 cut(s) 148, 397
RsaI GTAC 2 cut(s) 293, 534
RsaNI GTAC 2 cut(s) 292, 533
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 5 cut(s) 129, 148, 342, 397, 658
Sau96I GGNCC 3 cut(s) 42, 450, 550
SchI GAGTC 1 cut(s) 110
SetI ASST 4 cut(s) 424, 435, 559, 721
SfaNI GCATC 4 cut(s) 166, 497, 605, 625
SinI GGWCC 2 cut(s) 42, 550
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 4 cut(s) 72, 195, 236, 258
SsiI CCGC 1 cut(s) 366
SspI AATATT 3 cut(s) 166, 222, 300
SspMI CTAG 4 cut(s) 159, 173, 216, 392
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 424
TaqI TCGA 2 cut(s) 470, 721
TaqII GACCGA 1 cut(s) 567
TasI AATT 4 cut(s) 72, 195, 236, 258
TatI WGTACW 1 cut(s) 532
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 5 cut(s) 5, 467, 542, 641, 683
TscAI CASTG 2 cut(s) 21, 480
TseFI GTSAC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 4 cut(s) 200, 422, 510, 568
TspGWI ACGGA 2 cut(s) 651, 690
TspRI CASTG 2 cut(s) 21, 480
VpaK11BI GGWCC 2 cut(s) 42, 550
XapI RAATTY 1 cut(s) 195
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 2 cut(s) 283, 671
XmnI GAANNNNTTC 2 cut(s) 640, 682
XspI CTAG 4 cut(s) 159, 173, 216, 392
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.