pycom10g25930

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
27382225 .. 27383087
863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g25930.1

Sequence Viewer

Length: 777 bp
ATGAAAGTTGGGTTGAATTGGAAAAAAGCGTTGGAATGGATCTTAACATCTTGGAAATCAGAAGATGACCCTTCAACCGGGGACTATAGTTTTCGGCTTTTTTCGAAGCAGACTGCCATTCCACATTATTTTGTGTACAAGGGTTTAGCTAAGTATTGGAGATCTAATCCCGGGCCATGGCCTAATTATGTGAGCAATAGCGAAGAGAAGTGTTATTTCCTTGTAAATGATAACACATCTGTAATTAGAACTGTGTTGAGGGACTATGGTTCATATCAACAACTGAGATGGAATGATGATGATGATGAATGGGAGGAACTCTGGGAGGTGCCAAAATATTGGTGTGACAATTATGGACAGTGTGGTCCTAACAGCAGATGTAGCCCTGAAAATATTTTGTTTGAGTGCGAGTGTCTTCCAGGGTATGAACCAAAATCTGTGAATGATTGGAACCGGAGAGATGGGTCGGATGGGTGCGTGAGTAAGCGAATTGGGGTATCAAAGTGTGGGAATGGAGATGAGTTTGTGAAGGTGGTGCGTGTTAAAGATCCAGACACATCGAGAGCAGCACAGTTGTTAACAAATATCGGTGCAAATGAGTGTGAGCAAGTGTGCTTGAGCAATTGTTCCTGCACAGCATATCTGAGAGCAGAATGGGAAGGGCGGAGTGATTGCTTGTTTTGGTATGGTGATTTGATGGACATCTTAATGCAGACAGAGTTGGGACGAGATATATATGTTCGCGTAGACAAAGTCGAATTAGATCAGAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

259

Amino Acids

29.97

Weight (kDa)

4.75

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 66 - 146 5.6e-17 S-locus glycoprotein domain
PAN_2 PF08276 169 - 235 1.3e-17 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 747
AccII CGCG 1 cut(s) 744
AciI CCGC 1 cut(s) 664
AclWI GGATC 2 cut(s) 47, 542
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 77, 177
AgsI TTSAA 2 cut(s) 16, 75
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 2 cut(s) 47, 542
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 173, 179
ApeKI GCWGC 1 cut(s) 566
AspS9I GGNCC 2 cut(s) 173, 365
AsuC2I CCSGG 3 cut(s) 79, 171, 172
AsuHPI GGTGA 1 cut(s) 701
AsuII TTCGAA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 578
BccI CCATC 4 cut(s) 282, 455, 464, 691
BciT130I CCWGG 1 cut(s) 420
BcnI CCSGG 3 cut(s) 79, 171, 172
BfmI CTRYAG 1 cut(s) 85
BglII AGATCT 1 cut(s) 161
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 4 cut(s) 79, 171, 172, 420
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 173, 365
BmiI GGNNCC 2 cut(s) 330, 452
BmrFI CCNGG 4 cut(s) 79, 171, 172, 420
BpiI GAAGAC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 637
BpuMI CCSGG 3 cut(s) 79, 171, 172
BsaBI GATNNNNATC 1 cut(s) 701
BsaJI CCNNGG 4 cut(s) 78, 170, 176, 419
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 177
Bse8I GATNNNNATC 1 cut(s) 701
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 78, 170, 176, 419
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 77, 177
BseMII CTCAG 2 cut(s) 275, 635
BseXI GCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 616
Bsh1236I CGCG 1 cut(s) 744
BshFI GGCC 2 cut(s) 175, 181
BshNI GGYRCC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 78, 171, 454
BslFI GGGAC 3 cut(s) 95, 275, 738
BslI CCNNNNNNNGG 2 cut(s) 77, 177
BsmFI GGGAC 3 cut(s) 95, 275, 738
BsnI GGCC 2 cut(s) 175, 181
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 4 cut(s) 39, 161, 547, 763
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 664
BspANI GGCC 2 cut(s) 175, 181
BspCNI CTCAG 2 cut(s) 276, 636
BspFNI CGCG 1 cut(s) 744
BspLI GGNNCC 2 cut(s) 330, 452
BspPI GGATC 2 cut(s) 47, 542
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 135
BssECI CCNNGG 4 cut(s) 78, 170, 176, 419
BssMI GATC 4 cut(s) 39, 161, 547, 763
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 253, 360, 573
Bst6I CTCTTC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 150, 284, 644
BstDSI CCRYGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 744
BstKTI GATC 4 cut(s) 42, 164, 550, 766
BstMBI GATC 4 cut(s) 39, 161, 547, 763
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 4 cut(s) 77, 169, 170, 418
BstSFI CTRYAG 1 cut(s) 85
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 3 cut(s) 39, 161, 547
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 3 cut(s) 39, 161, 547
BsuRI GGCC 2 cut(s) 175, 181
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 173, 365
Cfr9I CCCGGG 1 cut(s) 170
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 177
CviJI RGCY 5 cut(s) 97, 149, 175, 181, 384
CviKI_1 RGCY 5 cut(s) 97, 149, 175, 181, 384
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 3 cut(s) 150, 284, 644
DpnI GATC 4 cut(s) 41, 163, 549, 765
DpnII GATC 4 cut(s) 39, 161, 547, 763
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 180
FaqI GGGAC 3 cut(s) 95, 275, 738
FatI CATG 1 cut(s) 176
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 1 cut(s) 567
GluI GCNGC 1 cut(s) 567
HaeIII GGCC 2 cut(s) 175, 181
HapII CCGG 3 cut(s) 78, 171, 454
Hin1II CATG 1 cut(s) 180
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 3 cut(s) 78, 171, 454
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 3 cut(s) 136, 579, 748
Hpy188I TCNGA 4 cut(s) 61, 469, 645, 768
Hpy188III TCNNGA 2 cut(s) 551, 561
Hpy8I GTNNAC 3 cut(s) 136, 579, 748
HpyAV CCTTC 3 cut(s) 81, 523, 653
HpyCH4III ACNGT 3 cut(s) 253, 360, 573
HpyCH4V TGCA 3 cut(s) 593, 633, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 3 cut(s) 150, 284, 644
Hsp92II CATG 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 4 cut(s) 39, 161, 547, 763
LpnPI CCDG 9 cut(s) 91, 184, 307, 399, 405, 432, 467, 564, 643
Lsp1109I GCAGC 1 cut(s) 578
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 41, 163, 549, 765
MboI GATC 4 cut(s) 39, 161, 547, 763
MboII GAAGA 3 cut(s) 74, 215, 407
MfeI CAATTG 1 cut(s) 622
MflI RGATCY 3 cut(s) 39, 161, 547
MluCI AATT 7 cut(s) 16, 184, 243, 349, 489, 622, 758
MmeI TCCRAC 2 cut(s) 12, 447
MnlI CCTC 3 cut(s) 252, 307, 319
MseI TTAA 4 cut(s) 44, 543, 578, 707
MslI CAYNNNNRTG 1 cut(s) 707
MspI CCGG 3 cut(s) 78, 171, 454
MspR9I CCNGG 4 cut(s) 79, 171, 172, 420
MunI CAATTG 1 cut(s) 622
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 744
MwoI GCNNNNNNNGC 1 cut(s) 381
NciI CCSGG 3 cut(s) 79, 171, 172
NcoI CCATGG 1 cut(s) 176
NdeII GATC 4 cut(s) 39, 161, 547, 763
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 2 cut(s) 330, 452
NmuCI GTSAC 1 cut(s) 344
NspV TTCGAA 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 752
PkrI GCNGC 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 330, 452
PspPI GGNCC 2 cut(s) 173, 365
PsuI RGATCY 3 cut(s) 39, 161, 547
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 4 cut(s) 44, 543, 578, 707
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 4 cut(s) 39, 161, 547, 763
Sau96I GGNCC 2 cut(s) 173, 365
ScrFI CCNGG 4 cut(s) 79, 171, 172, 420
SetI ASST 3 cut(s) 151, 330, 534
SfcI CTRYAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 1 cut(s) 365
SmaI CCCGGG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 7 cut(s) 16, 184, 243, 349, 489, 622, 758
SsiI CCGC 1 cut(s) 664
SspI AATATT 2 cut(s) 338, 394
StyD4I CCNGG 4 cut(s) 77, 169, 170, 418
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 253, 360, 573
TaqI TCGA 3 cut(s) 104, 560, 756
TasI AATT 7 cut(s) 16, 184, 243, 349, 489, 622, 758
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 4 cut(s) 44, 543, 578, 707
Tru9I TTAA 4 cut(s) 44, 543, 578, 707
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 4 cut(s) 17, 261, 321, 441
TspMI CCCGGG 1 cut(s) 170
TspRI CASTG 1 cut(s) 365
Tth111I GACNNNGTC 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 365
XmaI CCCGGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.