Rroxscaffold_1G00070530

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000112
Physical Location & Seq
Reverse (-)
91431483 .. 91433005
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070530.1

Sequence Viewer

Length: 765 bp
ATGAGTGACAAAGAGTGTGAGCAGGAGTGCCTAAGAAACTGTTCTTGCACCGCATATTTGAGCACCGAAAATGAAGGGACCGTTGATTGCTTGACATGGTATGATGACTTGATGGACATTTTAGTGTACACAGAGCTTGGACAAGATCTCTACGTTAGTGTGAATGCAACCGTGCATAGACTTTGTGGAGGCAGAGGAGCTTGTGGAAACCCGAGACACCCCGAATTGCAATTTTTTGATCTTGACACAATAACAGCAGCCACAGAGCACTTCTCTCGTGTCAATGAACTTGGCCATGGTGGTTTTGGCTCTGTTTATAAGCTACCAAATGAACAGAAAGTTGCTGTGAAAAGACTGTCCAAAACTTCAGGACAAGGGATCGAAGAATTCAAAAATGAAGTTTTACTTATAGCAAGACTTCAACACAGGAATCTTGTGAAACTTTTAGGCTGTTGTATAAAGGGAGAAGAAAGGATGTTAGTGCTAGAATACATGCCTAATAAAAGCTTAAACTCCTTTCTTTTTGATGACACAAGACGGTCCTTCTTGGATTGGGAAAAGCGCTTTGAAATTATCAACGGGATTGCTCGTGGGATTTTGTATCTGCACCAAGACTCAAGATTGAGGATCATCCATAGAGATCTGAAAACTAGTAATATTCTTCTAGATGCCGAGATGAACCCAAGAATTTCTGATTTTGGCATGGCTAGAATATTCCACAGAGACCAATTGCAAGATAAGACAAGGCGAATTGTTGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

254

Amino Acids

29.18

Weight (kDa)

6.26

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 40 1.6e-10 PAN-like domain
Pkinase PF00069 92 - 248 3.2e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 94 - 246 1.2e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 386, 635
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 2 cut(s) 386, 687
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 128
AfeI AGCGCT 1 cut(s) 563
AgsI TTSAA 3 cut(s) 391, 422, 569
AhlI ACTAGT 1 cut(s) 650
AluBI AGCT 4 cut(s) 136, 200, 322, 507
AluI AGCT 4 cut(s) 136, 200, 322, 507
Alw21I GWGCWC 2 cut(s) 65, 270
Alw26I GTCTC 2 cut(s) 208, 717
AlwI GGATC 2 cut(s) 386, 635
Ama87I CYCGRG 1 cut(s) 211
Aor51HI AGCGCT 1 cut(s) 563
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 386, 687
Asp700I GAANNNNTTC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 2 cut(s) 78, 540
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 2 cut(s) 78, 540
BalI TGGCCA 1 cut(s) 294
BauI CACGAG 2 cut(s) 276, 588
Bbv12I GWGCWC 2 cut(s) 65, 270
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BcoDI GTCTC 2 cut(s) 208, 717
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 4 cut(s) 485, 651, 665, 708
BfoI RGCGCY 1 cut(s) 565
BglII AGATCT 2 cut(s) 145, 640
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 2 cut(s) 78, 540
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 78, 540
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 658
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpuEI CTTGAG 1 cut(s) 601
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 480, 630
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 65, 270
BsiHKCI CYCGRG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 208, 717
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 65, 270
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 5 cut(s) 145, 238, 378, 627, 640
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 2 cut(s) 386, 635
BspTNI GGTCTC 1 cut(s) 717
BsrGI TGTACA 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 5 cut(s) 145, 238, 378, 627, 640
BssSI CACGAG 2 cut(s) 276, 588
BssT1I CCWWGG 1 cut(s) 295
Bst2BI CACGAG 2 cut(s) 276, 588
Bst4CI ACNGT 5 cut(s) 41, 82, 172, 357, 540
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 480, 630
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 5 cut(s) 148, 241, 381, 630, 643
BstMAI GTCTC 2 cut(s) 208, 717
BstMBI GATC 5 cut(s) 145, 238, 378, 627, 640
BstNSI RCATGY 1 cut(s) 496
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 145, 640
BstYI RGATCY 2 cut(s) 145, 640
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 480, 630
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 2 cut(s) 78, 540
Csp6I GTAC 1 cut(s) 127
CviAII CATG 4 cut(s) 96, 296, 493, 703
CviJI RGCY 9 cut(s) 136, 200, 260, 294, 309, 322, 450, 507, 707
CviKI_1 RGCY 9 cut(s) 136, 200, 260, 294, 309, 322, 450, 507, 707
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 32
DpnI GATC 5 cut(s) 147, 240, 380, 629, 642
DpnII GATC 5 cut(s) 145, 238, 378, 627, 640
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 78, 540
Eco47III AGCGCT 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 4 cut(s) 99, 299, 496, 706
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 91
FatI CATG 4 cut(s) 95, 295, 492, 702
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 487, 617
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 4 cut(s) 485, 651, 665, 708
GlaI GCGC 1 cut(s) 563
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 1 cut(s) 564
Hin1II CATG 4 cut(s) 99, 299, 496, 706
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 2 cut(s) 430, 614
Hpy166II GTNNAC 2 cut(s) 127, 129
Hpy188I TCNGA 2 cut(s) 645, 694
Hpy188III TCNNGA 4 cut(s) 242, 369, 618, 665
Hpy8I GTNNAC 2 cut(s) 127, 129
HpyAV CCTTC 2 cut(s) 68, 553
HpyCH4III ACNGT 5 cut(s) 41, 82, 172, 357, 540
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 48, 167, 175, 229, 607, 733
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 4 cut(s) 99, 299, 496, 706
HspAI GCGC 1 cut(s) 562
Kzo9I GATC 5 cut(s) 145, 238, 378, 627, 640
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 3 cut(s) 8, 354, 412
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 658
MaeI CTAG 4 cut(s) 485, 651, 665, 708
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 5
MalI GATC 5 cut(s) 147, 240, 380, 629, 642
MboI GATC 5 cut(s) 145, 238, 378, 627, 640
MboII GAAGA 3 cut(s) 395, 479, 653
MfeI CAATTG 1 cut(s) 728
MflI RGATCY 2 cut(s) 145, 640
MhlI GDGCHC 2 cut(s) 65, 270
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 7 cut(s) 224, 230, 386, 570, 687, 728, 750
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 3 cut(s) 182, 188, 618
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 294
MunI CAATTG 1 cut(s) 728
Mva1269I GAATGC 1 cut(s) 169
NcoI CCATGG 1 cut(s) 295
NdeII GATC 5 cut(s) 145, 238, 378, 627, 640
NlaIII CATG 4 cut(s) 99, 299, 496, 706
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 496
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
PsiI TTATAA 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 78, 540
PsuI RGATCY 2 cut(s) 145, 640
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 5 cut(s) 145, 238, 378, 627, 640
Sau96I GGNCC 2 cut(s) 78, 540
SchI GAGTC 1 cut(s) 608
SduI GDGCHC 2 cut(s) 65, 270
SetI ASST 5 cut(s) 138, 156, 202, 324, 509
SfaNI GCATC 1 cut(s) 658
SinI GGWCC 2 cut(s) 78, 540
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SpeI ACTAGT 1 cut(s) 650
Sse9I AATT 7 cut(s) 224, 230, 386, 570, 687, 728, 750
SsiI CCGC 1 cut(s) 51
SspI AATATT 2 cut(s) 658, 714
SspMI CTAG 4 cut(s) 485, 651, 665, 708
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 5 cut(s) 41, 82, 172, 357, 540
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 381
TasI AATT 7 cut(s) 224, 230, 386, 570, 687, 728, 750
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 87, 300, 345, 411, 692
VpaK11BI GGWCC 2 cut(s) 78, 540
XapI RAATTY 2 cut(s) 386, 687
XbaI TCTAGA 1 cut(s) 664
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 4 cut(s) 485, 651, 665, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.