Rroxscaffold_1G00070510

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
91428466 .. 91429010
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070510.1

Sequence Viewer

Length: 471 bp
ATGTTGTTATATGCAGTGGGTATATGTCACCGGCCAGAGTATGCAGTTTTTGGTAGATATTCAACAAAATCGGATGTCTTTAGCTTCGGGATCATAATATTGGAGATCATAAGCAGCAAGAAAAACTCTGGTTCTTGTTGGGAGGATCATTCCATGAACTTGATAGGAAATGTTTGGCAGATGTGGGGTGAAGACAGAGCTTTAGAAATTATGGATTCATCACTAGAGTTATATCAACCAGATGAAGTCTTGAGATGCATTCAAGTTGGGCTCTTATGTGTGCAAGAAGATTCAAAGGACCGGCCTAACATGTCAGCTGCTGTTTTCATGTTGAGTGGTGAAGCATCTCTTTCAACTCCTAAGCAGCCTGCATTTGTTTTTAGGAAAAGTGCATGCAGTAATATTCCATCCCCTACAAATGGATTATGTTCAATAAACGACTTAACAATAACCAATGTGGATGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

156

Amino Acids

17.36

Weight (kDa)

4.95

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 12 - 107 8.1e-08 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 114 - 156 7.8e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 98, 153
AcoI YGGCCR 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 5 cut(s) 63, 263, 294, 354, 432
AluBI AGCT 3 cut(s) 84, 200, 317
AluI AGCT 3 cut(s) 84, 200, 317
AlwI GGATC 2 cut(s) 98, 153
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 2 cut(s) 32, 302
ApeKI GCWGC 3 cut(s) 114, 317, 364
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 3 cut(s) 20, 200, 350
AvaII GGWCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 126, 304, 376
BccI CCATC 1 cut(s) 415
BfaI CTAG 1 cut(s) 224
BisI GCNGC 3 cut(s) 115, 318, 365
BlsI GCNGC 3 cut(s) 116, 319, 366
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmsI GCATC 2 cut(s) 245, 353
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 2 cut(s) 30, 300
BseGI GGATG 3 cut(s) 79, 407, 466
BseLI CCNNNNNNNGG 1 cut(s) 419
BseXI GCAGC 3 cut(s) 126, 304, 376
BshFI GGCC 2 cut(s) 34, 304
BsiSI CCGG 2 cut(s) 31, 301
BslI CCNNNNNNNGG 1 cut(s) 419
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 2 cut(s) 34, 304
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 90, 105, 145
BspANI GGCC 2 cut(s) 34, 304
BspPI GGATC 2 cut(s) 98, 153
BsrFI RCCGGY 2 cut(s) 30, 300
BssAI RCCGGY 2 cut(s) 30, 300
BssMI GATC 3 cut(s) 90, 105, 145
BstC8I GCNNGC 2 cut(s) 369, 394
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 3 cut(s) 79, 407, 466
BstKTI GATC 3 cut(s) 93, 108, 148
BstMBI GATC 3 cut(s) 90, 105, 145
BstNSI RCATGY 2 cut(s) 313, 396
BstV1I GCAGC 3 cut(s) 126, 304, 376
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 34, 304
BtsCI GGATG 3 cut(s) 79, 407, 466
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 369, 394
CaiI CAGNNNCTG 1 cut(s) 320
Cfr10I RCCGGY 2 cut(s) 30, 300
Cfr13I GGNCC 1 cut(s) 298
CviAII CATG 4 cut(s) 154, 310, 328, 393
CviJI RGCY 7 cut(s) 34, 84, 200, 271, 304, 317, 367
CviKI_1 RGCY 7 cut(s) 34, 84, 200, 271, 304, 317, 367
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 92, 107, 147
DpnII GATC 3 cut(s) 90, 105, 145
EaeI YGGCCR 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 4 cut(s) 157, 313, 331, 396
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FatI CATG 4 cut(s) 153, 309, 327, 392
Fnu4HI GCNGC 3 cut(s) 115, 318, 365
FokI GGATG 2 cut(s) 86, 394
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 115, 318, 365
FspBI CTAG 1 cut(s) 224
GluI GCNGC 3 cut(s) 115, 318, 365
HaeIII GGCC 2 cut(s) 34, 304
HapII CCGG 2 cut(s) 31, 301
Hin1II CATG 4 cut(s) 157, 313, 331, 396
HinfI GANTC 2 cut(s) 215, 290
HpaII CCGG 2 cut(s) 31, 301
HphI GGTGA 3 cut(s) 20, 200, 350
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 88, 250
HpyCH4V TGCA 7 cut(s) 14, 44, 258, 283, 371, 392, 396
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 4 cut(s) 157, 313, 331, 396
Kzo9I GATC 3 cut(s) 90, 105, 145
LpnPI CCDG 6 cut(s) 44, 48, 114, 252, 314, 381
Lsp1109I GCAGC 3 cut(s) 126, 304, 376
LweI GCATC 2 cut(s) 245, 353
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 26
MalI GATC 3 cut(s) 92, 107, 147
MboI GATC 3 cut(s) 90, 105, 145
MboII GAAGA 2 cut(s) 203, 299
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 207
MnlI CCTC 1 cut(s) 136
Mph1103I ATGCAT 1 cut(s) 260
MseI TTAA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 31, 301
Mva1269I GAATGC 1 cut(s) 258
NdeII GATC 3 cut(s) 90, 105, 145
NlaIII CATG 4 cut(s) 157, 313, 331, 396
NmuCI GTSAC 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 2 cut(s) 313, 396
PaeI GCATGC 1 cut(s) 396
PciI ACATGT 1 cut(s) 309
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 215, 290
PkrI GCNGC 3 cut(s) 116, 319, 366
PscI ACATGT 1 cut(s) 309
PspPI GGNCC 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 3 cut(s) 115, 318, 365
Sau3AI GATC 3 cut(s) 90, 105, 145
Sau96I GGNCC 1 cut(s) 298
SduI GDGCHC 1 cut(s) 273
SetI ASST 3 cut(s) 86, 202, 319
SfaNI GCATC 2 cut(s) 245, 353
SinI GGWCC 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SphI GCATGC 1 cut(s) 396
Sse9I AATT 1 cut(s) 207
SspI AATATT 2 cut(s) 99, 403
SspMI CTAG 1 cut(s) 224
TaqI TCGA 1 cut(s) 466
TasI AATT 1 cut(s) 207
TfiI GAWTC 2 cut(s) 215, 290
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 114, 317, 364
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 170, 207, 258, 316
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 2 cut(s) 313, 396
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.