RchiOBHm_Chr5g0006341

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000112
Physical Location & Seq
Forward (+)
3948942 .. 3952097
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28747

Sequence Viewer

Length: 2424 bp
ATGTTATTCAAAGCTCTGCTTCTCATCCTCCTCTTCCGATTTTGCGAATCCAGGGACACCATAACATGGAACCAAGAACAACTGAAGGATGATGGTGGAGTTTTGGTGTCCAAACAGAGCAAGTTTGAATTGGGTTTCTTCAGCCCCGGAAATTCTAGCTACCGGTATGTTGGAATTTGGTATTCTCAGACTAGTGTATCTAACAAAATAGTGGTGTGGGTTGCAAACAGGAACAATCCCATCAATAATACCTCTGGTGTGCTCACAATAAACAGGTATGGAGAACTAGACCTTTATGCTTATAACATGGAGAGCACTCCTATTTGGTCTAGTAATGTGTCGCGGTCGGTTCAAAATGTTAACACAAGCACTTTATCTGCACAACTTTTAGATACAGGAAATCTAGTTGTGTTCCAGGATGATAATAATGAAAACTTTTTATGGCAAAGTTTTGATCATCCCACAGATACTTTAATTCCAGGTATGAAAGTTGGGATGAATTGGAAAACTGGGCGAGAATGGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGGAACTGGGGACTATACCTTAAGGCTCTATCCAAATCAGATTGCATCCCCCCAATTTTTTATGTACAAGGGTTCGAGTAAGTATTGGCGAAGTGATCCAGGGACAACGGGTTTGGTCACTAATCAAGAGGAAACTTATTATCCCATGAATAACACCAATGCAATTACAAGAGCAACAGTGATTGATTCTGCTGTAGAAGGCTTTACATGGGATGATGGTGGCCTTCAATGGAAGGTAGGCTTCTCTGCACCGAAGTCCCGGTGTGACTGGTATGGAGAGTGCGGTGCCAACAGCAAATGTCTCCCTGACAATGTTATTATGTTTTGGTGTGATTGTTTACCAGGGTATGTGCCTAATTCTATTAGTGACTGGAATCATAAAAATGGGTCAGGTGGATGTGTGAGTAATCGACTTGGTTTGTTAAAGTGTGGAGATGGAGACGGGTTTGTGAAGGTGGCAAGAGTTAAATATCCTGACACATCGATAGGAGCATTGTCAAAATCAGGTATGAGTGCCAAAGAGTGTGAGCAGGAGTGCCTAAGAAATTGTTCTTGTACCGCATATTTGAGCACTGAAAATGAAGGGCCTGTTGATTGCTTGACATGGTATGATGACTTGATGGACATTAAAATGTACACAGAGATTGGACAAGATCTCTACGTTCGTGTGAATGCGACCGTGTTAGCTGCAAATGCCAGACGATCAGAAGGTTTCTTGGAAAGGAGGCGTATGCTGGCTATTCCAATACTGTCTGCTGTGCTAGCATTGGTACTAATCATTATGCTTGCATGTTGGTGGCGCAAGAAGAACAGGAACACAAAAGACTTTGTGGAGGCAGAGGAGCTTGTGGAAAAACAGAGACACCCTGAATTGCAATTTTTCGATCTTGACACAATAGTCGCAGCAACAGACCACTTCTCTCGTGTCAATGAACTTGGCCATGGTGGATTTGGCTCTGTTTATAAGGGTCAGCTACCAAATGAACAGAAAGTTGCTGTGAAAAGATTGTCCCAAACTTCAGGACAAGGGATCGAAGAATTCAAAAATGAAGTTGCACTTATAGCAAGACTTCAACACAGGAATCTTGTGAAACTTTTAGGCTGTTGTATAAAGGGAGAAGAAAGGATGTTAGTGCTAGAATACATGCCTAACAAAAGCTTGAACTCCTTTCTTTTTGATAACACAAGACGGTCCTTCTTGGATTGGGAAAAGCGCTTTGAAATTATCAACGGGATTGCTCGTGGGATTCTGTATCTTCACCAAGACTCAAGATTGAGGATCATCCATAGAGATCTGAAAACTAGCAATATTCTTCTAGATGCCGAGATGAACCCAAAAATTTCTGATTTTGGCATGGCTAGAATATTCCACAGAGATCAACTACAAGATAAGACGAGCCGAATTGTTGGAACATATGGCTACATGTCACCAGAGTACGCAGTATTTGGAAGATTTTCCATGAAATCTGATGTATTTAGTTTTGGGATCATAATGTTGGAGATTGTAAGTGGCCGGAAAAACAATGATTCTGATTTGGAGGATCCTTCCATGAACTTGATAGGACGTGTTTGGGAGCTTTGGGGAAAAGGCAGAGCCTTAGATATTGTTGATTCCACACTAAAGTCATATCAGCCTAATGAAGTCATGAGATGCATACAAGTTGCGCTCTTATGTGTACAAGAAGATTCAAAGGACCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGGTGAATCATCTCCTCCATTGCCTAAGCATCCAGCATTTGTTTACAGAAGAGATTCCGGCATTGATGTTGATCCATTACTTCCAAACAGATCTTATTCTATAAATGACTTGACAATAACTACAATGGAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

807

Amino Acids

91.48

Weight (kDa)

6.05

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 180 7.4e-35 D-mannose binding lectin
S_locus_glycop PF00954 225 - 304 1.3e-11 S-locus glycoprotein domain
PAN_2 PF08276 328 - 394 9.6e-18 PAN-like domain
Pkinase PF00069 492 - 757 2.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 494 - 759 2.1e-51 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 303, 1518
AasI GACNNNNNNGTC 1 cut(s) 1451
Acc36I ACCTGC 1 cut(s) 2263
AccB1I GGYRCC 1 cut(s) 839
AccB7I CCANNNNNTGG 1 cut(s) 66
AccII CGCG 1 cut(s) 343
AciI CCGC 3 cut(s) 343, 837, 1113
AclWI GGATC 7 cut(s) 644, 1592, 1841, 2048, 2090, 2103, 2351
AcoI YGGCCR 2 cut(s) 1492, 2065
AcsI RAATTY 4 cut(s) 151, 174, 1592, 1893
AcuI CTGAAG 3 cut(s) 104, 124, 1557
AfaI GTAC 6 cut(s) 620, 1111, 1190, 1326, 1991, 2232
AfeI AGCGCT 1 cut(s) 1769
AfiI CCNNNNNNNGG 2 cut(s) 66, 560
AflII CTTAAG 1 cut(s) 574
AflIII ACRYGT 2 cut(s) 1977, 2119
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 9 cut(s) 10, 128, 353, 782, 1597, 1628, 1717, 1775, 2244
AhlI ACTAGT 1 cut(s) 191
AjiI CACGTC 1 cut(s) 2120
AjnI CCWGG 6 cut(s) 50, 414, 478, 553, 652, 895
AluBI AGCT 8 cut(s) 14, 159, 1241, 1399, 1528, 1713, 2131, 2417
AluI AGCT 8 cut(s) 14, 159, 1241, 1399, 1528, 1713, 2131, 2417
Alw21I GWGCWC 3 cut(s) 264, 317, 1127
Alw26I GTCTC 3 cut(s) 860, 987, 1408
AlwI GGATC 7 cut(s) 644, 1592, 1841, 2048, 2090, 2103, 2351
Aor51HI AGCGCT 1 cut(s) 1769
AoxI GGCC 4 cut(s) 775, 1139, 1492, 2065
ApeKI GCWGC 2 cut(s) 1241, 1457
ApoI RAATTY 4 cut(s) 151, 174, 1592, 1893
ArsI GACNNNNNNTTYG 2 cut(s) 649, 681
AsiGI ACCGGT 1 cut(s) 162
Asp700I GAANNNNTTC 3 cut(s) 1102, 2008, 2338
AspLEI GCGC 3 cut(s) 1356, 1770, 2221
AspS9I GGNCC 3 cut(s) 1139, 1746, 2248
AsuC2I CCSGG 2 cut(s) 147, 814
AsuHPI GGTGA 3 cut(s) 1805, 1974, 2300
AsuNHI GCTAGC 1 cut(s) 1315
AvaII GGWCC 2 cut(s) 1746, 2248
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BalI TGGCCA 1 cut(s) 1494
BamHI GGATCC 1 cut(s) 2095
BanI GGYRCC 1 cut(s) 839
BauI CACGAG 2 cut(s) 1476, 1794
Bbv12I GWGCWC 3 cut(s) 264, 317, 1127
BbvI GCAGC 2 cut(s) 1228, 1469
BccI CCATC 5 cut(s) 86, 248, 764, 983, 1168
BciT130I CCWGG 6 cut(s) 52, 416, 480, 555, 654, 897
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 147, 814
BcoDI GTCTC 3 cut(s) 860, 987, 1408
BcuI ACTAGT 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 1771
BfrI CTTAAG 1 cut(s) 574
BfuAI ACCTGC 1 cut(s) 2263
BglII AGATCT 3 cut(s) 1207, 1846, 2375
BisI GCNGC 2 cut(s) 1242, 1458
BlsI GCNGC 2 cut(s) 1243, 1459
Bme1390I CCNGG 8 cut(s) 52, 147, 416, 480, 555, 654, 814, 897
Bme18I GGWCC 2 cut(s) 1746, 2248
BmgBI CACGTC 1 cut(s) 2120
BmgT120I GGNCC 3 cut(s) 1139, 1746, 2248
BmiI GGNNCC 3 cut(s) 71, 841, 2097
BmrFI CCNGG 8 cut(s) 52, 147, 416, 480, 555, 654, 814, 897
BmrI ACTGGG 2 cut(s) 519, 570
BmsI GCATC 4 cut(s) 608, 1864, 2195, 2323
BmtI GCTAGC 1 cut(s) 1319
BmuI ACTGGG 2 cut(s) 519, 570
Bpu10I CCTNAGC 1 cut(s) 2310
BpuEI CTTGAG 1 cut(s) 1807
BpuMI CCSGG 2 cut(s) 147, 814
Bsa29I ATCGAT 1 cut(s) 1037
BsaBI GATNNNNATC 1 cut(s) 2355
BsaJI CCNNGG 6 cut(s) 51, 145, 553, 653, 896, 1495
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 560
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 4 cut(s) 514, 565, 827, 929
Bse3DI GCAATG 1 cut(s) 2303
Bse8I GATNNNNATC 1 cut(s) 2355
BseBI CCWGG 6 cut(s) 52, 416, 480, 555, 654, 897
BseCI ATCGAT 1 cut(s) 1037
BseDI CCNNGG 6 cut(s) 51, 145, 553, 653, 896, 1495
BseJI GATNNNNATC 1 cut(s) 2355
BseLI CCNNNNNNNGG 2 cut(s) 66, 560
BseMI GCAATG 1 cut(s) 2303
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 4 cut(s) 514, 565, 827, 929
BseRI GAGGAG 3 cut(s) 20, 1409, 2289
BseXI GCAGC 2 cut(s) 1228, 1469
BsgI GTGCAG 2 cut(s) 363, 786
Bsh1236I CGCG 1 cut(s) 343
Bsh1285I CGRYCG 2 cut(s) 347, 1233
BshFI GGCC 4 cut(s) 777, 1141, 1494, 2067
BshNI GGYRCC 1 cut(s) 839
BshTI ACCGGT 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 1037
BsiEI CGRYCG 2 cut(s) 347, 1233
BsiHKAI GWGCWC 3 cut(s) 264, 317, 1127
BsiSI CCGG 5 cut(s) 147, 163, 814, 2068, 2343
BslFI GGGAC 5 cut(s) 68, 578, 670, 796, 1549
BslI CCNNNNNNNGG 2 cut(s) 66, 560
BsmAI GTCTC 3 cut(s) 860, 987, 1408
BsmBI CGTCTC 1 cut(s) 987
BsmFI GGGAC 5 cut(s) 68, 578, 670, 796, 1549
BsmI GAATGC 1 cut(s) 1231
BsnI GGCC 4 cut(s) 777, 1141, 1494, 2067
Bsp1286I GDGCHC 3 cut(s) 264, 317, 1127
Bsp1407I TGTACA 3 cut(s) 618, 1188, 2230
Bsp19I CCATGG 1 cut(s) 1495
BspACI CCGC 3 cut(s) 343, 837, 1113
BspANI GGCC 4 cut(s) 777, 1141, 1494, 2067
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 1037
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 2199
BspLI GGNNCC 3 cut(s) 71, 841, 2097
BspMI ACCTGC 1 cut(s) 2263
BspOI GCTAGC 1 cut(s) 1319
BspPI GGATC 7 cut(s) 644, 1592, 1841, 2048, 2090, 2103, 2351
BspT107I GGYRCC 1 cut(s) 839
BspTI CTTAAG 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 2303
BsrFI RCCGGY 1 cut(s) 162
BsrGI TGTACA 3 cut(s) 618, 1188, 2230
BsrI ACTGG 4 cut(s) 514, 565, 827, 929
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 6 cut(s) 51, 145, 553, 653, 896, 1495
BssSI CACGAG 2 cut(s) 1476, 1794
BssT1I CCWWGG 1 cut(s) 1495
Bst2BI CACGAG 2 cut(s) 1476, 1794
Bst2UI CCWGG 6 cut(s) 52, 416, 480, 555, 654, 897
Bst4CI ACNGT 4 cut(s) 733, 1234, 1305, 1746
Bst6I CTCTTC 2 cut(s) 38, 2329
BstAFI CTTAAG 1 cut(s) 574
BstAUI TGTACA 3 cut(s) 618, 1188, 2230
BstC8I GCNNGC 3 cut(s) 1290, 1317, 1341
BstDEI CTNAG 4 cut(s) 186, 1094, 2152, 2310
BstDSI CCRYGG 1 cut(s) 1495
BstFNI CGCG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 1771
BstHHI GCGC 3 cut(s) 1356, 1770, 2221
BstMAI GTCTC 3 cut(s) 860, 987, 1408
BstMCI CGRYCG 2 cut(s) 347, 1233
BstMWI GCNNNNNNNGC 4 cut(s) 1247, 1316, 1616, 2264
BstNI CCWGG 6 cut(s) 52, 416, 480, 555, 654, 897
BstNSI RCATGY 3 cut(s) 1347, 1702, 1981
BstSCI CCNGG 8 cut(s) 50, 145, 414, 478, 553, 652, 812, 895
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 1228, 1469
BstX2I RGATCY 4 cut(s) 1207, 1846, 2095, 2375
BstYI RGATCY 4 cut(s) 1207, 1846, 2095, 2375
Bsu15I ATCGAT 1 cut(s) 1037
BsuRI GGCC 4 cut(s) 777, 1141, 1494, 2067
BsuTUI ATCGAT 1 cut(s) 1037
BtgI CCRYGG 1 cut(s) 1495
BtrI CACGTC 1 cut(s) 2120
BtsIMutI CAGTG 2 cut(s) 738, 1125
BveI ACCTGC 1 cut(s) 2263
Cac8I GCNNGC 3 cut(s) 1290, 1317, 1341
CciI TCATGA 1 cut(s) 2199
CfoI GCGC 3 cut(s) 1356, 1770, 2221
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 1139, 1746, 2248
ClaI ATCGAT 1 cut(s) 1037
Csp6I GTAC 6 cut(s) 619, 1110, 1189, 1325, 1990, 2231
CspAI ACCGGT 1 cut(s) 162
CviQI GTAC 6 cut(s) 619, 1110, 1189, 1325, 1990, 2231
DdeI CTNAG 4 cut(s) 186, 1094, 2152, 2310
DrdI GACNNNNNNGTC 1 cut(s) 1451
DseDI GACNNNNNNGTC 1 cut(s) 1451
EaeI YGGCCR 2 cut(s) 1492, 2065
Eam1104I CTCTTC 2 cut(s) 38, 2329
EarI CTCTTC 2 cut(s) 38, 2329
Eco130I CCWWGG 1 cut(s) 1495
Eco47I GGWCC 2 cut(s) 1746, 2248
Eco47III AGCGCT 1 cut(s) 1769
Eco57I CTGAAG 3 cut(s) 104, 124, 1557
EcoO109I RGGNCCY 1 cut(s) 1139
EcoRI GAATTC 1 cut(s) 1592
EcoRII CCWGG 6 cut(s) 50, 414, 478, 553, 652, 895
EcoT14I CCWWGG 1 cut(s) 1495
EcoT22I ATGCAT 1 cut(s) 2210
ErhI CCWWGG 1 cut(s) 1495
Esp3I CGTCTC 1 cut(s) 987
FalI AAGNNNNNCTT 5 cut(s) 35, 779, 811, 1596, 1628
FaqI GGGAC 5 cut(s) 68, 578, 670, 796, 1549
FauNDI CATATG 1 cut(s) 1969
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 1242, 1458
Fsp4HI GCNGC 2 cut(s) 1242, 1458
GlaI GCGC 3 cut(s) 1355, 1769, 2220
GluI GCNGC 2 cut(s) 1242, 1458
HaeII RGCGCY 1 cut(s) 1771
HaeIII GGCC 4 cut(s) 777, 1141, 1494, 2067
HapII CCGG 5 cut(s) 147, 163, 814, 2068, 2343
HhaI GCGC 3 cut(s) 1356, 1770, 2221
Hin6I GCGC 3 cut(s) 1354, 1768, 2219
HinP1I GCGC 3 cut(s) 1354, 1768, 2219
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 1711
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 5 cut(s) 147, 163, 814, 2068, 2343
HphI GGTGA 3 cut(s) 1805, 1974, 2300
Hpy166II GTNNAC 5 cut(s) 361, 893, 1191, 2231, 2329
Hpy188I TCNGA 8 cut(s) 38, 189, 594, 1261, 1851, 1900, 2023, 2086
Hpy188III TCNNGA 7 cut(s) 680, 1028, 1442, 1575, 1824, 1871, 2200
Hpy8I GTNNAC 5 cut(s) 361, 893, 1191, 2231, 2329
HpyAV CCTTC 9 cut(s) 79, 746, 781, 788, 1000, 1130, 1256, 1759, 2109
HpyCH4III ACNGT 4 cut(s) 733, 1234, 1305, 1746
HpyCH4IV ACGT 2 cut(s) 1215, 2119
HpyF10VI GCNNNNNNNGC 4 cut(s) 1247, 1316, 1616, 2264
HpyF3I CTNAG 4 cut(s) 186, 1094, 2152, 2310
HpySE526I ACGT 2 cut(s) 1215, 2119
HspAI GCGC 3 cut(s) 1354, 1768, 2219
Ksp22I TGATCA 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 361
LmnI GCTCC 3 cut(s) 1043, 1396, 2128
Lsp1109I GCAGC 2 cut(s) 1228, 1469
LweI GCATC 4 cut(s) 608, 1864, 2195, 2323
MaeII ACGT 2 cut(s) 1215, 2119
MaeIII GTNAC 5 cut(s) 540, 670, 818, 920, 1980
MflI RGATCY 4 cut(s) 1207, 1846, 2095, 2375
MhlI GDGCHC 3 cut(s) 264, 317, 1127
MlsI TGGCCA 1 cut(s) 1494
MluNI TGGCCA 1 cut(s) 1494
MlyI GAGTC 1 cut(s) 1814
MmeI TCCRAC 3 cut(s) 151, 1942, 2031
Mox20I TGGCCA 1 cut(s) 1494
Mph1103I ATGCAT 1 cut(s) 2210
MroXI GAANNNNTTC 3 cut(s) 1102, 2008, 2338
MscI TGGCCA 1 cut(s) 1494
MseI TTAA 7 cut(s) 360, 473, 527, 575, 977, 1020, 1182
MslI CAYNNNNRTG 3 cut(s) 936, 1184, 1348
Msp20I TGGCCA 1 cut(s) 1494
MspCI CTTAAG 1 cut(s) 574
MspI CCGG 5 cut(s) 147, 163, 814, 2068, 2343
MspR9I CCNGG 8 cut(s) 52, 147, 416, 480, 555, 654, 814, 897
Mva1269I GAATGC 1 cut(s) 1231
MvaI CCWGG 6 cut(s) 52, 416, 480, 555, 654, 897
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 4 cut(s) 1247, 1316, 1616, 2264
NciI CCSGG 2 cut(s) 147, 814
NcoI CCATGG 1 cut(s) 1495
NdeI CATATG 1 cut(s) 1969
NheI GCTAGC 1 cut(s) 1315
NlaIV GGNNCC 3 cut(s) 71, 841, 2097
NmeAIII GCCGAG 1 cut(s) 1903
NmuCI GTSAC 5 cut(s) 540, 670, 818, 920, 1980
NsiI ATGCAT 1 cut(s) 2210
NspI RCATGY 3 cut(s) 1347, 1702, 1981
PagI TCATGA 1 cut(s) 2199
PciI ACATGT 1 cut(s) 1977
PctI GAATGC 1 cut(s) 1231
PdmI GAANNNNTTC 3 cut(s) 1102, 2008, 2338
PflMI CCANNNNNTGG 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 414
PinAI ACCGGT 1 cut(s) 162
PkrI GCNGC 2 cut(s) 1243, 1459
PleI GAGTC 1 cut(s) 1814
PpsI GAGTC 1 cut(s) 1814
PscI ACATGT 1 cut(s) 1977
PsiI TTATAA 2 cut(s) 303, 1518
Psp6I CCWGG 6 cut(s) 50, 414, 478, 553, 652, 895
PspGI CCWGG 6 cut(s) 50, 414, 478, 553, 652, 895
PspN4I GGNNCC 3 cut(s) 71, 841, 2097
PspPI GGNCC 3 cut(s) 1139, 1746, 2248
PsuI RGATCY 4 cut(s) 1207, 1846, 2095, 2375
RsaI GTAC 6 cut(s) 620, 1111, 1190, 1326, 1991, 2232
RsaNI GTAC 6 cut(s) 619, 1110, 1189, 1325, 1990, 2231
RseI CAYNNNNRTG 3 cut(s) 936, 1184, 1348
SaqAI TTAA 7 cut(s) 360, 473, 527, 575, 977, 1020, 1182
SatI GCNGC 2 cut(s) 1242, 1458
Sau96I GGNCC 3 cut(s) 1139, 1746, 2248
SchI GAGTC 1 cut(s) 1814
ScrFI CCNGG 8 cut(s) 52, 147, 416, 480, 555, 654, 814, 897
SduI GDGCHC 3 cut(s) 264, 317, 1127
SfaNI GCATC 4 cut(s) 608, 1864, 2195, 2323
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 2 cut(s) 1746, 2248
SmiMI CAYNNNNRTG 3 cut(s) 936, 1184, 1348
SmlI CTYRAG 2 cut(s) 574, 1822
SmoI CTYRAG 2 cut(s) 574, 1822
SpeI ACTAGT 1 cut(s) 191
SsiI CCGC 3 cut(s) 343, 837, 1113
SspI AATATT 2 cut(s) 1864, 1920
StyD4I CCNGG 8 cut(s) 50, 145, 414, 478, 553, 652, 812, 895
StyI CCWWGG 1 cut(s) 1495
TaaI ACNGT 4 cut(s) 733, 1234, 1305, 1746
TaiI ACGT 2 cut(s) 1218, 2122
TaqI TCGA 6 cut(s) 629, 964, 1037, 1437, 1587, 2419
TaqII GACCGA 1 cut(s) 2265
TatI WGTACW 3 cut(s) 618, 1188, 2230
Tru1I TTAA 7 cut(s) 360, 473, 527, 575, 977, 1020, 1182
Tru9I TTAA 7 cut(s) 360, 473, 527, 575, 977, 1020, 1182
TscAI CASTG 2 cut(s) 738, 1132
TseFI GTSAC 5 cut(s) 540, 670, 818, 920, 1980
TseI GCWGC 2 cut(s) 1241, 1457
Tsp45I GTSAC 5 cut(s) 540, 670, 818, 920, 1980
TspRI CASTG 2 cut(s) 738, 1132
Van91I CCANNNNNTGG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 574
VpaK11BI GGWCC 2 cut(s) 1746, 2248
XapI RAATTY 4 cut(s) 151, 174, 1592, 1893
XbaI TCTAGA 1 cut(s) 1870
XceI RCATGY 3 cut(s) 1347, 1702, 1981
XcmI CCANNNNNNNNNTGG 1 cut(s) 1502
XmnI GAANNNNTTC 3 cut(s) 1102, 2008, 2338
Zsp2I ATGCAT 1 cut(s) 2210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.