Rmu_co8373645.1_g000001

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8373645.1
OG0000112
Physical Location & Seq
Forward (+)
185 .. 1082
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8373645.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
atggtggagaataaagtagggcaaactagtagacacccagatttgcaacttttccatctcagcacaataatagctgcaacaaatgacttctctctggctaataaactcggagaaggtggttttggctctgtttataagggccagttatccaaccaacagaagattgctgtgaaaagattgtccaagagttcaatacaaggggttgaagaatttaaaaacgaagttacactcattgcaaaacttcaacacaggaatcttgtgaagctattaggttgttgtatagaggaagaagagaagttgttaatctatgaatacttgccaaacaaaagtttggacttctttctttttgatcaaagtcaaaggttggccttggattggagaaaccgatttggcataattactggagttgctcgtggaattttgtatctccacgaagactcaaggttgagaattgtccacagggatctgaaacccagcaatgtcctgcttgatgctgacatgaagccgaaaatttcagatttcggcttggccagaatatttgatggggaccaactgcaggatgagacaaaaaaaattgtagggacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

195

Amino Acids

22.13

Weight (kDa)

8.48

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AccI GTMKAC 1 cut(s) 31
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 3 cut(s) 209, 417, 510
AfiI CCNNNNNNNGG 2 cut(s) 375, 556
AgsI TTSAA 3 cut(s) 192, 206, 245
AhlI ACTAGT 1 cut(s) 26
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 2 cut(s) 74, 265
AluI AGCT 2 cut(s) 74, 265
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 1 cut(s) 471
AoxI GGCC 3 cut(s) 139, 366, 528
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 3 cut(s) 209, 417, 510
AspS9I GGNCC 2 cut(s) 139, 547
AvaII GGWCC 1 cut(s) 547
BalI TGGCCA 1 cut(s) 530
BauI CACGAG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 63, 536
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 557
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 554
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 139, 547
BmiI GGNNCC 1 cut(s) 548
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 556
Bse1I ACTGG 2 cut(s) 142, 406
Bse3DI GCAATG 2 cut(s) 231, 484
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 2 cut(s) 375, 556
BseMI GCAATG 2 cut(s) 231, 484
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 142, 406
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 3 cut(s) 141, 368, 530
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 375, 556
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 3 cut(s) 141, 368, 530
Bsp143I GATC 2 cut(s) 349, 463
BspANI GGCC 3 cut(s) 141, 368, 530
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 548
BspMAI CTGCAG 1 cut(s) 558
BspPI GGATC 1 cut(s) 471
BsrDI GCAATG 2 cut(s) 231, 484
BsrI ACTGG 2 cut(s) 142, 406
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 2 cut(s) 349, 463
BssSI CACGAG 1 cut(s) 411
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 411
Bst6I CTCTTC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 565
BstKTI GATC 2 cut(s) 352, 466
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 2 cut(s) 349, 463
BstSFI CTRYAG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 3 cut(s) 141, 368, 530
BtsCI GGATG 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 139, 547
CviAII CATG 1 cut(s) 499
CviJI RGCY 9 cut(s) 74, 98, 126, 141, 265, 368, 505, 525, 530
CviKI_1 RGCY 9 cut(s) 74, 98, 126, 141, 265, 368, 505, 525, 530
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 351, 465
DpnII GATC 2 cut(s) 349, 463
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 1 cut(s) 502
FaiI YATR 6 cut(s) 135, 281, 309, 395, 500, 586
FaqI GGGAC 1 cut(s) 560
FatI CATG 1 cut(s) 498
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 3 cut(s) 141, 368, 530
Hin1II CATG 1 cut(s) 502
HinfI GANTC 2 cut(s) 253, 437
Hpy166II GTNNAC 2 cut(s) 32, 457
Hpy188I TCNGA 3 cut(s) 110, 468, 517
Hpy8I GTNNAC 2 cut(s) 32, 457
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 4 cut(s) 46, 77, 236, 556
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 349, 463
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 351, 465
MboI GATC 2 cut(s) 349, 463
MboII GAAGA 5 cut(s) 172, 218, 299, 302, 446
MflI RGATCY 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 6 cut(s) 209, 396, 417, 450, 510, 573
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 1 cut(s) 277
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 2 cut(s) 213, 302
Msp20I TGGCCA 1 cut(s) 530
NdeII GATC 2 cut(s) 349, 463
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PsiI TTATAA 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 548
PspPI GGNCC 2 cut(s) 139, 547
PstI CTGCAG 1 cut(s) 558
PsuI RGATCY 1 cut(s) 463
SaqAI TTAA 2 cut(s) 213, 302
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 349, 463
Sau96I GGNCC 2 cut(s) 139, 547
SchI GAGTC 1 cut(s) 431
SetI ASST 6 cut(s) 76, 118, 267, 274, 365, 446
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 554
SinI GGWCC 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 6 cut(s) 209, 396, 417, 450, 510, 573
SspI AATATT 1 cut(s) 537
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 369
TasI AATT 6 cut(s) 209, 396, 417, 450, 510, 573
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 213, 302
Tru9I TTAA 2 cut(s) 213, 302
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 324, 515
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 3 cut(s) 209, 417, 510
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.