Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8771370 .. 8773535

Gene Structure 2166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24807.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAGAATCGAATTCGATACCTTCCGTTGTTATCAATTCCTCTAAACAGAATGGTCCTATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATAAACAAAATTTTGAGAATTGCTATCTATTTCTACAGTATATGGGAGAGCTACAATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGAAAAGAAAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCAAACCCTTTCATTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATACATTTCCTAGTGATGAGCTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGAAAGTACAAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAATTTCATCAAAATCGTAGAGAAAAAGGATTCCGAGAAGCTGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

5.67

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	23 - 223	1.9e-49	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	105 - 208	5.2e-11	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	3 cut(s)	184, 379, 658
AcsI	RAATTY	2 cut(s)	13, 118
AfaI	GTAC	2 cut(s)	259, 590
AfiI	CCNNNNNNNGG	2 cut(s)	254, 323
AgsI	TTSAA	2 cut(s)	176, 611
AjnI	CCWGG	2 cut(s)	247, 253
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	6 cut(s)	87, 160, 211, 411, 532, 700
AluI	AGCT	6 cut(s)	87, 160, 211, 411, 532, 700
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	13, 118
Asp718I	GGTACC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	56, 251, 305
AsuHPI	GGTGA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	3 cut(s)	56, 251, 305
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	249, 255
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	249, 255
Bme18I	GGWCC	3 cut(s)	56, 251, 305
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	3 cut(s)	56, 251, 305
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	249, 255
BoxI	GACNNNNGTC	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 323
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	249, 255
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	254, 323
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	254, 323
BsmAI	GTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	184, 379, 658
BspCNI	CTCAG	1 cut(s)	631
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	2 cut(s)	249, 255
Bst4CI	ACNGT	4 cut(s)	147, 202, 292, 494
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	616
BstKTI	GATC	1 cut(s)	504
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	1 cut(s)	501
BstNI	CCWGG	2 cut(s)	249, 255
BstPAI	GACNNNNGTC	1 cut(s)	653
BstPI	GGTNACC	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	247, 253
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	56, 251, 305
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	258, 589
CviAII	CATG	2 cut(s)	401, 546
CviJI	RGCY	8 cut(s)	87, 160, 211, 411, 447, 532, 572, 700
CviKI_1	RGCY	8 cut(s)	87, 160, 211, 411, 447, 532, 572, 700
CviQI	GTAC	2 cut(s)	258, 589
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	488
Eco47I	GGWCC	3 cut(s)	56, 251, 305
Eco53kI	GAGCTC	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	532
EcoO65I	GGTNACC	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	247, 253
EcoRV	GATATC	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	2 cut(s)	404, 549
FatI	CATG	2 cut(s)	400, 545
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	1 cut(s)	573
HapII	CCGG	1 cut(s)	620
Hin1II	CATG	2 cut(s)	404, 549
HinfI	GANTC	3 cut(s)	8, 269, 689
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	2 cut(s)	181, 421
Hpy188I	TCNGA	2 cut(s)	305, 694
Hpy188III	TCNNGA	5 cut(s)	67, 266, 456, 499, 620
Hpy8I	GTNNAC	2 cut(s)	181, 421
HpyAV	CCTTC	2 cut(s)	33, 437
HpyCH4III	ACNGT	4 cut(s)	147, 202, 292, 494
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	3 cut(s)	286, 343, 400
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	2 cut(s)	404, 549
Kpn2I	TCCGGA	1 cut(s)	619
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	501
LguI	GCTCTTC	1 cut(s)	201
Lsp1109I	GCAGC	1 cut(s)	559
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	3 cut(s)	381, 538, 578
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	3 cut(s)	218, 452, 566
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	8 cut(s)	13, 37, 76, 118, 127, 611, 651, 661
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	6 cut(s)	52, 224, 273, 359, 529, 634
Mph1103I	ATGCAT	1 cut(s)	402
MroI	TCCGGA	1 cut(s)	619
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	249, 255
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	2 cut(s)	249, 255
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	2 cut(s)	404, 549
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	381, 578
NsiI	ATGCAT	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	8, 689
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	653
PsiI	TTATAA	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	247, 253
PspEI	GGTNACC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	247, 253
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	3 cut(s)	56, 251, 305
PspXI	VCTCGAGB	1 cut(s)	533
RsaI	GTAC	2 cut(s)	259, 590
RsaNI	GTAC	2 cut(s)	258, 589
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	3 cut(s)	56, 251, 305
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	249, 255
SduI	GDGCHC	1 cut(s)	534
SexAI	ACCWGGT	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	143
Sfr274I	CTCGAG	1 cut(s)	533
SinI	GGWCC	3 cut(s)	56, 251, 305
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	264, 533
SmoI	CTYRAG	2 cut(s)	264, 533
Sse9I	AATT	8 cut(s)	13, 37, 76, 118, 127, 611, 651, 661
SsiI	CCGC	3 cut(s)	184, 379, 658
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	247, 253
TaaI	ACNGT	4 cut(s)	147, 202, 292, 494
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	4 cut(s)	11, 17, 504, 534
TasI	AATT	8 cut(s)	13, 37, 76, 118, 127, 611, 651, 661
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	2 cut(s)	8, 689
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	2 cut(s)	381, 578
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	2 cut(s)	381, 578
TspDTI	ATGAA	4 cut(s)	207, 463, 605, 655
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	3 cut(s)	56, 251, 305
XapI	RAATTY	2 cut(s)	13, 118
XhoI	CTCGAG	1 cut(s)	533
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.