Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

66351936 .. 66358443

Gene Structure 6508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG419000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTTGTCAATGAGACCAATTCGAAGTCTTCAGTTTCTGAAAAGAGGGCCAACAGCCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTCTGCCAGTATATGGGAGAGCTCGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACAGTGGATGAACTAAAAAGGAAAAATCCCAGAGGAGTCTTGATCTCCCCAGGGCCAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGAACCATTGTCCCCTTATTTGGTGTGTGTATGGGTCTGCAGTGCATTGGGGAGGCTTTTGGAGGGAATGTTGTTCGTTCTCCTTATGGTGTCGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGTGAAGAACTTGAGATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGTATCTTCAGGGTGTCCAGTTCCATCCTGAAAGTATCATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAAAACTGATCGAGAAAAGTGAGTCGGAATCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

222

Amino Acids

24.69

Weight (kDa)

5.11

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	23 - 210	6.7e-54	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	91 - 195	8.3e-12	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	15, 545
AfiI	CCNNNNNNNGG	4 cut(s)	112, 215, 284, 606
AgsI	TTSAA	2 cut(s)	137, 467
AjnI	CCWGG	2 cut(s)	208, 214
AluBI	AGCT	4 cut(s)	87, 121, 372, 408
AluI	AGCT	4 cut(s)	87, 121, 372, 408
Alw21I	GWGCWC	2 cut(s)	123, 374
Alw26I	GTCTC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	48, 212
ApeKI	GCWGC	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspS9I	GGNCC	3 cut(s)	48, 212, 510
AsuHPI	GGTGA	1 cut(s)	82
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	123, 374
BarI	GAAGNNNNNNTAC	2 cut(s)	580, 612
BbsI	GAAGAC	2 cut(s)	21, 408
Bbv12I	GWGCWC	2 cut(s)	123, 374
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	3 cut(s)	68, 512, 585
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	2 cut(s)	210, 216
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	210, 216
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	3 cut(s)	48, 212, 510
BmiI	GGNNCC	2 cut(s)	222, 268
BmrFI	CCNGG	2 cut(s)	210, 216
BpiI	GAAGAC	2 cut(s)	21, 408
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	4 cut(s)	208, 209, 215, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 215, 284, 606
Bse1I	ACTGG	2 cut(s)	106, 571
Bse3DI	GCAATG	2 cut(s)	154, 242
BseBI	CCWGG	2 cut(s)	210, 216
BseDI	CCNNGG	4 cut(s)	208, 209, 215, 513
BseGI	GGATG	4 cut(s)	131, 172, 523, 577
BseLI	CCNNNNNNNGG	4 cut(s)	112, 215, 284, 606
BseMI	GCAATG	2 cut(s)	154, 242
BseMII	CTCAG	1 cut(s)	651
BseNI	ACTGG	2 cut(s)	106, 571
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	2 cut(s)	50, 214
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	123, 374
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	4 cut(s)	112, 215, 284, 606
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	50, 214
Bso31I	GGTCTC	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	3 cut(s)	123, 223, 374
Bsp143I	GATC	2 cut(s)	201, 636
BspANI	GGCC	2 cut(s)	50, 214
BspCNI	CTCAG	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	222, 268
BspMAI	CTGCAG	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	154, 242
BsrI	ACTGG	2 cut(s)	106, 571
BssECI	CCNNGG	4 cut(s)	208, 209, 215, 513
BssMI	GATC	2 cut(s)	201, 636
Bst2UI	CCWGG	2 cut(s)	210, 216
Bst4CI	ACNGT	4 cut(s)	163, 253, 455, 476
Bst6I	CTCTTC	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	131, 172, 523, 577
BstKTI	GATC	2 cut(s)	204, 639
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	201, 636
BstNI	CCWGG	2 cut(s)	210, 216
BstSCI	CCNGG	2 cut(s)	208, 214
BstSFI	CTRYAG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	2 cut(s)	21, 408
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	50, 214
BtsCI	GGATG	4 cut(s)	131, 172, 523, 577
BtsI	GCAGTG	2 cut(s)	311, 435
BtsIMutI	CAGTG	3 cut(s)	168, 311, 435
Cac8I	GCNNGC	1 cut(s)	442
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	48, 212, 510
CviAII	CATG	2 cut(s)	362, 507
CviJI	RGCY	9 cut(s)	50, 57, 87, 121, 214, 320, 372, 408, 533
CviKI_1	RGCY	9 cut(s)	50, 57, 87, 121, 214, 320, 372, 408, 533
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	2 cut(s)	203, 638
DpnII	GATC	2 cut(s)	201, 636
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Ecl136II	GAGCTC	2 cut(s)	121, 372
Eco24I	GRGCYC	2 cut(s)	123, 374
Eco31I	GGTCTC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	510
Eco53kI	GAGCTC	2 cut(s)	121, 372
Eco57I	CTGAAG	2 cut(s)	15, 545
EcoICRI	GAGCTC	2 cut(s)	121, 372
EcoRII	CCWGG	2 cut(s)	208, 214
EcoRV	GATATC	1 cut(s)	449
EcoT38I	GRGCYC	2 cut(s)	123, 374
FaeI	CATG	2 cut(s)	365, 510
FaiI	YATR	9 cut(s)	81, 111, 113, 296, 351, 363, 387, 508, 552
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	361, 506
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	4 cut(s)	138, 179, 530, 564
FriOI	GRGCYC	2 cut(s)	123, 374
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	50, 214
Hin1II	CATG	2 cut(s)	365, 510
HinfI	GANTC	4 cut(s)	195, 230, 650, 656
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	5 cut(s)	40, 125, 601, 655, 661
Hpy188III	TCNNGA	4 cut(s)	199, 234, 581, 640
HpyAV	CCTTC	2 cut(s)	388, 596
HpyCH4III	ACNGT	4 cut(s)	163, 253, 455, 476
HpyCH4V	TGCA	4 cut(s)	247, 304, 309, 361
HpyF3I	CTNAG	1 cut(s)	660
Hsp92II	CATG	2 cut(s)	365, 510
Kzo9I	GATC	2 cut(s)	201, 636
LguI	GCTCTTC	1 cut(s)	362
Lsp1109I	GCAGC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	128, 539
MalI	GATC	2 cut(s)	203, 638
MboI	GATC	2 cut(s)	201, 636
MboII	GAAGA	5 cut(s)	21, 379, 413, 500, 551
MhlI	GDGCHC	3 cut(s)	123, 223, 374
MluCI	AATT	5 cut(s)	19, 76, 155, 462, 664
MlyI	GAGTC	2 cut(s)	204, 659
MmeI	TCCRAC	2 cut(s)	237, 633
MnlI	CCTC	6 cut(s)	39, 185, 310, 320, 391, 508
MseI	TTAA	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	210, 216
MvaI	CCWGG	2 cut(s)	210, 216
NdeII	GATC	2 cut(s)	201, 636
NlaIII	CATG	2 cut(s)	365, 510
NlaIV	GGNNCC	2 cut(s)	222, 268
NmuCI	GTSAC	2 cut(s)	128, 539
NspV	TTCGAA	1 cut(s)	23
PasI	CCCWGGG	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	230, 656
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	2 cut(s)	203, 658
PpsI	GAGTC	2 cut(s)	203, 658
PsiI	TTATAA	1 cut(s)	387
Psp124BI	GAGCTC	2 cut(s)	123, 374
Psp6I	CCWGG	2 cut(s)	208, 214
PspGI	CCWGG	2 cut(s)	208, 214
PspN4I	GGNNCC	2 cut(s)	222, 268
PspPI	GGNCC	3 cut(s)	48, 212, 510
PstI	CTGCAG	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	123, 374
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	2 cut(s)	201, 636
Sau96I	GGNCC	3 cut(s)	48, 212, 510
SchI	GAGTC	2 cut(s)	204, 659
ScrFI	CCNGG	2 cut(s)	210, 216
SduI	GDGCHC	3 cut(s)	123, 223, 374
SetI	ASST	6 cut(s)	89, 95, 123, 374, 410, 557
SfcI	CTRYAG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	5 cut(s)	19, 76, 155, 462, 664
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	2 cut(s)	123, 374
StyD4I	CCNGG	2 cut(s)	208, 214
TaaI	ACNGT	4 cut(s)	163, 253, 455, 476
TaqI	TCGA	2 cut(s)	23, 639
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	5 cut(s)	19, 76, 155, 462, 664
TfiI	GAWTC	2 cut(s)	230, 656
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	3 cut(s)	168, 311, 442
TseFI	GTSAC	2 cut(s)	128, 539
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	128, 539
TspDTI	ATGAA	2 cut(s)	168, 183
TspRI	CASTG	3 cut(s)	168, 311, 442
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	510
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.