Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

38985104 .. 38988740

Gene Structure 3637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGACCGCTTTCTCTTCTCTTCGGGTGCTATCACTCGCATCCTTTATTTTCTCAATCGAAATCTGGTCTCAAATTGGGAAATGGGTTCGCTGCAAAAGCTTCAATGGTTGTCAATGAGACCAATTCGAAGTCTTCAGTTTCTGAAAAGAGGGCCAACAGCCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTTTGCCAGTATATGGGAGAGCTTGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACAGTGGATGAACTAAAAAGGAAAAATCCTAGAGGAGTCTTGATCTCCCCGGGCCAGTTTTTAAGGGATTGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGGAATGTTGTTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGGTGTCCAGTTCCATCCTGAAAGTATCATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

231

Amino Acids

25.6

Weight (kDa)

7.01

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	58 - 106	3.5e-10	Glutamine amidotransferase class-I
GATase	PF00117	135 - 212	8.1e-10	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	120
AfiI	CCNNNNNNNGG	4 cut(s)	217, 401, 402, 671
AgsI	TTSAA	4 cut(s)	105, 242, 542, 572
AhdI	GACNNNNNGTC	1 cut(s)	389
AluBI	AGCT	5 cut(s)	101, 192, 226, 447, 483
AluI	AGCT	5 cut(s)	101, 192, 226, 447, 483
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	2 cut(s)	74, 113
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	153, 316
ApeKI	GCWGC	2 cut(s)	92, 608
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspS9I	GGNCC	4 cut(s)	153, 316, 383, 585
AsuC2I	CCSGG	2 cut(s)	314, 315
AsuHPI	GGTGA	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	383, 585
BaeGI	GKGCMC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
BbsI	GAAGAC	2 cut(s)	126, 483
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	79, 595
BccI	CCATC	3 cut(s)	173, 587, 650
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BcnI	CCSGG	2 cut(s)	314, 315
BcoDI	GTCTC	2 cut(s)	74, 113
BfaI	CTAG	2 cut(s)	294, 558
BisI	GCNGC	2 cut(s)	93, 609
BlsI	GCNGC	2 cut(s)	94, 610
Bme1390I	CCNGG	2 cut(s)	314, 315
Bme18I	GGWCC	2 cut(s)	383, 585
BmeRI	GACNNNNNGTC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	153, 316, 383, 585
BmiI	GGNNCC	2 cut(s)	339, 385
BmrFI	CCNGG	2 cut(s)	314, 315
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	2 cut(s)	126, 483
Bpu14I	TTCGAA	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	314, 315
BsaI	GGTCTC	2 cut(s)	74, 113
BsaJI	CCNNGG	3 cut(s)	312, 313, 588
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 401, 402, 671
Bse1I	ACTGG	3 cut(s)	211, 319, 636
Bse3DI	GCAATG	2 cut(s)	259, 359
BseDI	CCNNGG	3 cut(s)	312, 313, 588
BseGI	GGATG	5 cut(s)	40, 236, 277, 598, 642
BseLI	CCNNNNNNNGG	4 cut(s)	217, 401, 402, 671
BseMI	GCAATG	2 cut(s)	259, 359
BseNI	ACTGG	3 cut(s)	211, 319, 636
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	79, 595
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	155, 318
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	4 cut(s)	217, 401, 402, 671
BsmAI	GTCTC	2 cut(s)	74, 113
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	155, 318
Bso31I	GGTCTC	2 cut(s)	74, 113
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	340, 449
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	155, 318
BspLI	GGNNCC	2 cut(s)	339, 385
BspQI	GCTCTTC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	2 cut(s)	74, 113
BsrDI	GCAATG	2 cut(s)	259, 359
BsrI	ACTGG	3 cut(s)	211, 319, 636
BssECI	CCNNGG	3 cut(s)	312, 313, 588
BssMI	GATC	1 cut(s)	306
Bst4CI	ACNGT	4 cut(s)	268, 370, 530, 551
Bst6I	CTCTTC	3 cut(s)	21, 26, 437
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	517
BstF5I	GGATG	5 cut(s)	40, 236, 277, 598, 642
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	2 cut(s)	74, 113
BstMBI	GATC	1 cut(s)	306
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	312, 313
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	79, 595
BstV2I	GAAGAC	2 cut(s)	126, 483
BstXI	CCANNNNNNTGG	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	155, 318
BtsCI	GGATG	5 cut(s)	40, 236, 277, 598, 642
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	273, 510
Cac8I	GCNNGC	1 cut(s)	517
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr13I	GGNCC	4 cut(s)	153, 316, 383, 585
Cfr9I	CCCGGG	1 cut(s)	313
CviAII	CATG	2 cut(s)	437, 582
CviJI	RGCY	9 cut(s)	101, 155, 162, 192, 226, 318, 447, 483, 608
CviKI_1	RGCY	9 cut(s)	101, 155, 162, 192, 226, 318, 447, 483, 608
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DriI	GACNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	3 cut(s)	21, 26, 437
Eam1105I	GACNNNNNGTC	1 cut(s)	389
EarI	CTCTTC	3 cut(s)	21, 26, 437
Ecl136II	GAGCTC	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	2 cut(s)	74, 113
Eco32I	GATATC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	383, 585
Eco53kI	GAGCTC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	449
FaeI	CATG	2 cut(s)	440, 585
FaiI	YATR	8 cut(s)	186, 216, 218, 426, 438, 462, 583, 627
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	436, 581
Fnu4HI	GCNGC	2 cut(s)	93, 609
FokI	GGATG	5 cut(s)	27, 243, 284, 605, 629
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	2 cut(s)	93, 609
FspBI	CTAG	2 cut(s)	294, 558
GluI	GCNGC	2 cut(s)	93, 609
HaeIII	GGCC	2 cut(s)	155, 318
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	2 cut(s)	440, 585
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	300, 347
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	145, 666
Hpy188III	TCNNGA	3 cut(s)	304, 351, 646
HpyAV	CCTTC	2 cut(s)	463, 661
HpyCH4III	ACNGT	4 cut(s)	268, 370, 530, 551
HpyCH4V	TGCA	3 cut(s)	95, 364, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	440, 585
Kzo9I	GATC	1 cut(s)	306
LguI	GCTCTTC	1 cut(s)	437
Lsp1109I	GCAGC	2 cut(s)	79, 595
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	294, 558
MaeIII	GTNAC	2 cut(s)	233, 614
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	6 cut(s)	8, 13, 126, 454, 488, 575
MhlI	GDGCHC	2 cut(s)	340, 449
MluCI	AATT	6 cut(s)	74, 124, 181, 260, 537, 573
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	144, 290, 466, 583
MseI	TTAA	2 cut(s)	263, 326
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	314, 315
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	314, 315
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	2 cut(s)	440, 585
NlaIV	GGNNCC	2 cut(s)	339, 385
NmuCI	GTSAC	2 cut(s)	233, 614
NspV	TTCGAA	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	94, 610
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	339, 385
PspPI	GGNCC	4 cut(s)	153, 316, 383, 585
PspPPI	RGGWCCY	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	263, 326
SatI	GCNGC	2 cut(s)	93, 609
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	4 cut(s)	153, 316, 383, 585
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	314, 315
SduI	GDGCHC	2 cut(s)	340, 449
SetI	ASST	6 cut(s)	103, 194, 200, 228, 449, 485
SfaNI	GCATC	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	2 cut(s)	383, 585
SmaI	CCCGGG	1 cut(s)	315
Sse9I	AATT	6 cut(s)	74, 124, 181, 260, 537, 573
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	294, 558
SstI	GAGCTC	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	312, 313
TaaI	ACNGT	4 cut(s)	268, 370, 530, 551
TaqI	TCGA	2 cut(s)	59, 128
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	6 cut(s)	74, 124, 181, 260, 537, 573
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	263, 326
Tru9I	TTAA	2 cut(s)	263, 326
TscAI	CASTG	2 cut(s)	273, 517
TseFI	GTSAC	2 cut(s)	233, 614
TseI	GCWGC	2 cut(s)	92, 608
Tsp45I	GTSAC	2 cut(s)	233, 614
TspDTI	ATGAA	2 cut(s)	273, 288
TspMI	CCCGGG	1 cut(s)	313
TspRI	CASTG	2 cut(s)	273, 517
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	383, 585
XmaI	CCCGGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	294, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.