Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

900689 .. 904040

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTAAAAATATTTTGGACATCAGACAGGCAGATCCCTAGCATCCCTCTCTCTCTCTCCCTCTCTCTATCAATGGCGGCCACAGTGACCTCTCAGTCCTCGATCATACAGTCAAAACCCGCTTTCTCTTCAAAAACCCTGCAAAACCCTCGTCCTGCCTCCATTGCCGTGCCCTCCACCTCCCTTTCACGACTGCGATTTGGTGTGAAATTGGGAAATGGGTTCGCCGCGAAAGCTTCAATGGCCGTCGCTGAAACGAATTCGAAGCCCCCTGTTGCCGAAAAGAGGACCAACAATACCATCATTGTCATTGACAATTATGATAGCTTTACCTACAATCTCTGCCAGTATATGGGAGAGTTAGGATGTCTCTTTGAAGTCTATCGGAACGATGAACTAAGTGTTGATGAACTGAAAAGGAAAAATCCCAGAGGAGTGTTAATCTCTCCGGGGCCAGGCGCTCCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGCTAGGGCCCATTGTACCTTTATTTGGCGTATGTATGGGTTTGCAGTGCATCGGGGAGGCATTTGGTGGGAAAATTGTTCGTTCTCCTTTTGGCGTCATGCATGGGAAGAGCTCTCCTGTATATTATGATGAGAAGGAGGAAGATAGCTTGTTTTCGGGATTGTCAAACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATCGATAAGGACAGCTTTCCTGGTGAAGAACTTGAGATTACAGCATGGACAGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATACAGGCATCTTCAAGGGGTTCAGTTCCATCCTGAAAGTATCATAACTTCCGAAGGGAAGACAATTGTGCGTAACTTTATAAAGTCGATAGAGAAAAAAGAGTCTGAATCTGAGAACGAGAGGCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

307

Amino Acids

33.6

Weight (kDa)

6.55

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AasI	GACNNNNNNGTC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	77, 120, 228
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	78, 243
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	4 cut(s)	285, 352, 455, 524
AgsI	TTSAA	4 cut(s)	132, 240, 377, 803
AjnI	CCWGG	2 cut(s)	454, 721
AluBI	AGCT	6 cut(s)	236, 327, 502, 612, 648, 717
AluI	AGCT	6 cut(s)	236, 327, 502, 612, 648, 717
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	4 cut(s)	78, 243, 452, 506
ApaI	GGGCCC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	773
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	4 cut(s)	288, 452, 506, 507
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	737
AsuII	TTCGAA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	288
BaeGI	GKGCMC	2 cut(s)	174, 510
BanII	GRGCYC	2 cut(s)	510, 614
BarI	GAAGNNNNNNTAC	2 cut(s)	820, 852
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	760
BccI	CCATC	3 cut(s)	308, 752, 825
BceAI	ACGGC	2 cut(s)	152, 230
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	456, 723
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	39, 503
BfoI	RGCGCY	1 cut(s)	462
BisI	GCNGC	3 cut(s)	78, 228, 774
BlsI	GCNGC	3 cut(s)	79, 229, 775
Bme1390I	CCNGG	3 cut(s)	450, 456, 723
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	4 cut(s)	288, 452, 506, 507
BmiI	GGNNCC	2 cut(s)	453, 508
BmrFI	CCNGG	3 cut(s)	450, 456, 723
BmsI	GCATC	3 cut(s)	51, 558, 805
BpiI	GAAGAC	1 cut(s)	854
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 352, 455, 524
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	162, 482
BseBI	CCWGG	2 cut(s)	456, 723
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	4 cut(s)	42, 371, 763, 817
BseLI	CCNNNNNNNGG	4 cut(s)	285, 352, 455, 524
BseMI	GCAATG	2 cut(s)	162, 482
BseMII	CTCAG	2 cut(s)	107, 891
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	2 cut(s)	174, 510
BseXI	GCAGC	1 cut(s)	760
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	80, 245, 454, 508
BshVI	ATCGAT	1 cut(s)	705
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	4 cut(s)	285, 352, 455, 524
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	80, 245, 454, 508
Bsp119I	TTCGAA	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	506
Bsp1286I	GDGCHC	3 cut(s)	174, 510, 614
Bsp143I	GATC	2 cut(s)	33, 102
BspACI	CCGC	3 cut(s)	77, 120, 228
BspANI	GGCC	4 cut(s)	80, 245, 454, 508
BspCNI	CTCAG	2 cut(s)	106, 892
BspDI	ATCGAT	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	453, 508
BspPI	GGATC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	602
BspT104I	TTCGAA	1 cut(s)	263
BsrDI	GCAATG	2 cut(s)	162, 482
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	33, 102
BssNI	GRCGYC	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	456, 723
Bst4CI	ACNGT	4 cut(s)	85, 111, 493, 695
Bst6I	CTCTTC	2 cut(s)	133, 602
BstACI	GRCGYC	1 cut(s)	594
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	3 cut(s)	93, 398, 900
BstF5I	GGATG	4 cut(s)	42, 371, 763, 817
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	2 cut(s)	36, 105
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	33, 102
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 233, 242
BstNI	CCWGG	2 cut(s)	456, 723
BstSCI	CCNGG	3 cut(s)	448, 454, 721
BstSLI	GKGCMC	2 cut(s)	174, 510
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	760
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	705
BsuRI	GGCC	4 cut(s)	80, 245, 454, 508
BsuTUI	ATCGAT	1 cut(s)	705
BtsCI	GGATG	4 cut(s)	42, 371, 763, 817
BtsI	GCAGTG	2 cut(s)	551, 675
BtsIMutI	CAGTG	3 cut(s)	90, 551, 675
Cac8I	GCNNGC	1 cut(s)	682
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	4 cut(s)	288, 452, 506, 507
ClaI	ATCGAT	1 cut(s)	705
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	3 cut(s)	598, 602, 747
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	3 cut(s)	93, 398, 900
DpnI	GATC	2 cut(s)	35, 104
DpnII	GATC	2 cut(s)	33, 102
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	2 cut(s)	78, 243
Eam1104I	CTCTTC	2 cut(s)	133, 602
EarI	CTCTTC	2 cut(s)	133, 602
Ecl136II	GAGCTC	1 cut(s)	612
Eco24I	GRGCYC	2 cut(s)	510, 614
Eco32I	GATATC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	454, 721
EcoRV	GATATC	1 cut(s)	689
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	2 cut(s)	510, 614
FaeI	CATG	3 cut(s)	601, 605, 750
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FatI	CATG	3 cut(s)	597, 601, 746
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	78, 228, 774
FokI	GGATG	4 cut(s)	29, 378, 770, 804
FriOI	GRGCYC	2 cut(s)	510, 614
Fsp4HI	GCNGC	3 cut(s)	78, 228, 774
FspBI	CTAG	2 cut(s)	39, 503
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	78, 228, 774
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	80, 245, 454, 508
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	601, 605, 750
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	470, 890, 896
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	737
Hpy188I	TCNGA	5 cut(s)	25, 387, 841, 895, 901
Hpy188III	TCNNGA	4 cut(s)	189, 474, 657, 821
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	628, 836
HpyCH4III	ACNGT	4 cut(s)	85, 111, 493, 695
HpyCH4V	TGCA	5 cut(s)	142, 487, 544, 549, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 233, 242
HpyF3I	CTNAG	3 cut(s)	93, 398, 900
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	601, 605, 750
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	33, 102
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	2 cut(s)	466, 499
Lsp1109I	GCAGC	1 cut(s)	760
LweI	GCATC	3 cut(s)	51, 558, 805
MaeI	CTAG	2 cut(s)	39, 503
MaeIII	GTNAC	3 cut(s)	85, 779, 860
MalI	GATC	2 cut(s)	35, 104
MboI	GATC	2 cut(s)	33, 102
MboII	GAAGA	6 cut(s)	120, 619, 653, 740, 791, 859
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	3 cut(s)	174, 510, 614
MluCI	AATT	5 cut(s)	209, 259, 316, 573, 852
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	477
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	3 cut(s)	450, 456, 723
MunI	CAATTG	1 cut(s)	852
MvaI	CCWGG	2 cut(s)	456, 723
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	164, 233, 242
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	33, 102
NlaIII	CATG	3 cut(s)	601, 605, 750
NlaIV	GGNNCC	2 cut(s)	453, 508
NmuCI	GTSAC	2 cut(s)	85, 779
NsiI	ATGCAT	1 cut(s)	603
NspV	TTCGAA	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	470, 896
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	79, 229, 775
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PsiI	TTATAA	1 cut(s)	869
Psp124BI	GAGCTC	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	454, 721
PspGI	CCWGG	2 cut(s)	454, 721
PspN4I	GGNNCC	2 cut(s)	453, 508
PspOMI	GGGCCC	1 cut(s)	506
PspPI	GGNCC	4 cut(s)	288, 452, 506, 507
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	3 cut(s)	78, 228, 774
Sau3AI	GATC	2 cut(s)	33, 102
Sau96I	GGNCC	4 cut(s)	288, 452, 506, 507
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	3 cut(s)	450, 456, 723
SduI	GDGCHC	3 cut(s)	174, 510, 614
SfaNI	GCATC	3 cut(s)	51, 558, 805
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	5 cut(s)	209, 259, 316, 573, 852
SsiI	CCGC	3 cut(s)	77, 120, 228
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	39, 503
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	448, 454, 721
TaaI	ACNGT	4 cut(s)	85, 111, 493, 695
TaqI	TCGA	4 cut(s)	101, 263, 705, 875
TasI	AATT	5 cut(s)	209, 259, 316, 573, 852
TauI	GCSGC	2 cut(s)	80, 230
TfiI	GAWTC	2 cut(s)	470, 896
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	3 cut(s)	90, 551, 682
TseFI	GTSAC	2 cut(s)	85, 779
TseI	GCWGC	1 cut(s)	773
Tsp45I	GTSAC	2 cut(s)	85, 779
TspDTI	ATGAA	2 cut(s)	408, 423
TspRI	CASTG	3 cut(s)	90, 551, 682
Van91I	CCANNNNNTGG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	259
XspI	CTAG	2 cut(s)	39, 503
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.