Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

2356294 .. 2359142

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTGCCGCGATCTTATCTTTATGTGCGAACGAAATCGGTCTCAAATTGGGAAATGGGTTCGCTGCAAAAGCTTCAATGGTTGTCAATGAGACCAATTCGAAGTCTTCGATTTCGAAAAGAGGGCCAACAGCCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTCTGCCAGGAAAAATCCTAGAGGAGTCTTGATCTCCCCGGGGCCGAGGGGCACCCCAAGATTCGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGGAATGTTGTTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACACTGGCGAGATATCACGATCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGATCGATAATGGCTGCTCGTCACAAGAAATATAGAATCTGCACTATAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

178

Amino Acids

19.13

Weight (kDa)

9.14

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	61 - 175	2.8e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	239, 290, 291
AgsI	TTSAA	3 cut(s)	78, 431, 461
AhdI	GACNNNNNGTC	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	74, 164, 336, 372, 534
AluI	AGCT	5 cut(s)	74, 164, 336, 372, 534
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	47, 86
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	125, 218
ApeKI	GCWGC	3 cut(s)	5, 65, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspS9I	GGNCC	4 cut(s)	125, 218, 272, 474
AsuC2I	CCSGG	2 cut(s)	215, 216
AsuHPI	GGTGA	1 cut(s)	159
AsuII	TTCGAA	2 cut(s)	101, 116
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	272, 474
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	2 cut(s)	99, 372
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	52, 484
BccI	CCATC	2 cut(s)	145, 476
BciT130I	CCWGG	1 cut(s)	184
BcnI	CCSGG	2 cut(s)	215, 216
BcoDI	GTCTC	2 cut(s)	47, 86
BfaI	CTAG	2 cut(s)	195, 447
BisI	GCNGC	4 cut(s)	6, 9, 66, 498
BlsI	GCNGC	4 cut(s)	7, 10, 67, 499
Bme1390I	CCNGG	3 cut(s)	184, 215, 216
Bme18I	GGWCC	2 cut(s)	272, 474
BmeRI	GACNNNNNGTC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	125, 218, 272, 474
BmiI	GGNNCC	3 cut(s)	219, 229, 274
BmrFI	CCNGG	3 cut(s)	184, 215, 216
BpiI	GAAGAC	2 cut(s)	99, 372
Bpu14I	TTCGAA	2 cut(s)	101, 116
BpuMI	CCSGG	2 cut(s)	215, 216
Bsa29I	ATCGAT	1 cut(s)	488
BsaI	GGTCTC	2 cut(s)	47, 86
BsaJI	CCNNGG	5 cut(s)	213, 214, 215, 221, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 290, 291
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	5 cut(s)	213, 214, 215, 221, 477
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	3 cut(s)	239, 290, 291
BseMI	GCAATG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	52, 484
BsgI	GTGCAG	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	127, 220
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	239, 290, 291
BsmAI	GTCTC	2 cut(s)	47, 86
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	127, 220
Bso31I	GGTCTC	2 cut(s)	47, 86
BsoBI	CYCGRG	1 cut(s)	214
Bsp119I	TTCGAA	2 cut(s)	101, 116
Bsp1286I	GDGCHC	2 cut(s)	230, 338
Bsp143I	GATC	4 cut(s)	12, 207, 418, 485
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	127, 220
BspDI	ATCGAT	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	219, 229, 274
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	326
BspT104I	TTCGAA	2 cut(s)	101, 116
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	47, 86
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	5 cut(s)	213, 214, 215, 221, 477
BssMI	GATC	4 cut(s)	12, 207, 418, 485
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	259, 440
Bst6I	CTCTTC	1 cut(s)	326
BstBI	TTCGAA	2 cut(s)	101, 116
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	4 cut(s)	15, 210, 421, 488
BstMAI	GTCTC	2 cut(s)	47, 86
BstMBI	GATC	4 cut(s)	12, 207, 418, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 531
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	182, 213, 214
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	52, 484
BstV2I	GAAGAC	2 cut(s)	99, 372
Bsu15I	ATCGAT	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	127, 220
BsuTUI	ATCGAT	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	401
Cfr13I	GGNCC	4 cut(s)	125, 218, 272, 474
Cfr9I	CCCGGG	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	488
CviAII	CATG	2 cut(s)	326, 471
DpnI	GATC	4 cut(s)	14, 209, 420, 487
DpnII	GATC	4 cut(s)	12, 207, 418, 485
DriI	GACNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	326
Eam1105I	GACNNNNNGTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	47, 86
Eco32I	GATATC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	272, 474
Eco53kI	GAGCTC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	2 cut(s)	329, 474
FaiI	YATR	8 cut(s)	25, 158, 315, 327, 351, 472, 516, 530
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	325, 470
Fnu4HI	GCNGC	4 cut(s)	6, 9, 66, 498
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	4 cut(s)	6, 9, 66, 498
FspBI	CTAG	2 cut(s)	195, 447
GluI	GCNGC	4 cut(s)	6, 9, 66, 498
HaeIII	GGCC	2 cut(s)	127, 220
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	2 cut(s)	329, 474
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	3 cut(s)	201, 237, 519
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	205, 416
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	259, 440
HpyCH4V	TGCA	4 cut(s)	68, 253, 325, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 531
Hsp92II	CATG	2 cut(s)	329, 474
Kzo9I	GATC	4 cut(s)	12, 207, 418, 485
LguI	GCTCTTC	1 cut(s)	326
LpnPI	CCDG	5 cut(s)	169, 196, 228, 366, 389
Lsp1109I	GCAGC	2 cut(s)	52, 484
MaeI	CTAG	2 cut(s)	195, 447
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	4 cut(s)	14, 209, 420, 487
MboI	GATC	4 cut(s)	12, 207, 418, 485
MboII	GAAGA	4 cut(s)	99, 343, 377, 464
MhlI	GDGCHC	2 cut(s)	230, 338
MluCI	AATT	5 cut(s)	47, 97, 153, 426, 462
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	116, 191, 216, 355, 472
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	3 cut(s)	184, 215, 216
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	71, 531
NciI	CCSGG	2 cut(s)	215, 216
NdeII	GATC	4 cut(s)	12, 207, 418, 485
NlaIII	CATG	2 cut(s)	329, 474
NlaIV	GGNNCC	3 cut(s)	219, 229, 274
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	503
NspV	TTCGAA	2 cut(s)	101, 116
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	237, 519
PkrI	GCNGC	4 cut(s)	7, 10, 67, 499
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	272
PsiI	TTATAA	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	219, 229, 274
PspPI	GGNCC	4 cut(s)	125, 218, 272, 474
PspPPI	RGGWCCY	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	4 cut(s)	6, 9, 66, 498
Sau3AI	GATC	4 cut(s)	12, 207, 418, 485
Sau96I	GGNCC	4 cut(s)	125, 218, 272, 474
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	3 cut(s)	184, 215, 216
SduI	GDGCHC	2 cut(s)	230, 338
SetI	ASST	6 cut(s)	76, 166, 172, 338, 374, 536
SfuI	TTCGAA	2 cut(s)	101, 116
SinI	GGWCC	2 cut(s)	272, 474
SmaI	CCCGGG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	47, 97, 153, 426, 462
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	195, 447
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	182, 213, 214
TaaI	ACNGT	2 cut(s)	259, 440
TaqI	TCGA	4 cut(s)	101, 110, 116, 488
TaqII	GACCGA	2 cut(s)	29, 491
TasI	AATT	5 cut(s)	47, 97, 153, 426, 462
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	237, 519
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	5, 65, 497
Tsp45I	GTSAC	1 cut(s)	503
TspMI	CCCGGG	1 cut(s)	214
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	272, 474
XmaI	CCCGGG	1 cut(s)	214
XspI	CTAG	2 cut(s)	195, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.