Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

63804167 .. 63804990

Gene Structure 824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40987

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGTACTTATTAACACATAGTATCCTCCCGTTTGTAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTATTTGGTGTGTGTATGGGTCTGCAGTGCATTGGGGAGGCTTTTGGAGGCAAGTCTTCTAAGACAGAATATTTGGGAATGTTGTTCGTTCTCCTTATGGTGTCGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAAGTGACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGTGAAGAACTTGAAATTACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

120

Amino Acids

13.15

Weight (kDa)

5.58

Isoelectric Point (pI)

71.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	13 - 120	3.5e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	38, 107
AgsI	TTSAA	2 cut(s)	320, 350
AhdI	GACNNNNNGTC	1 cut(s)	95
AluBI	AGCT	2 cut(s)	221, 257
AluI	AGCT	2 cut(s)	221, 257
Alw21I	GWGCWC	1 cut(s)	223
ArsI	GACNNNNNNTTYG	4 cut(s)	157, 189, 244, 276
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	150, 257
Bbv12I	GWGCWC	1 cut(s)	223
BciVI	GTATCC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	89
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	45, 91
BpiI	GAAGAC	2 cut(s)	150, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 107
Bse3DI	GCAATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	38, 107
BseMI	GCAATG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	38, 107
BsmFI	GGGAC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	46, 223
BspLI	GGNNCC	2 cut(s)	45, 91
BspMAI	CTGCAG	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	76, 308, 329
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	150, 257
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	35
BtsI	GCAGTG	2 cut(s)	134, 288
BtsIMutI	CAGTG	2 cut(s)	134, 288
Cac8I	GCNNGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	211, 360
CviJI	RGCY	3 cut(s)	143, 221, 257
CviKI_1	RGCY	3 cut(s)	143, 221, 257
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	162
DriI	GACNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	2 cut(s)	214, 363
FaiI	YATR	6 cut(s)	21, 119, 200, 212, 236, 361
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	210, 359
FriOI	GRGCYC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	336
Hin1II	CATG	2 cut(s)	214, 363
HinfI	GANTC	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	3 cut(s)	76, 308, 329
HpyCH4V	TGCA	4 cut(s)	70, 127, 132, 210
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	214, 363
LguI	GCTCTTC	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	42, 251, 279
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	278
MboII	GAAGA	4 cut(s)	150, 228, 262, 353
MhlI	GDGCHC	2 cut(s)	46, 223
MluCI	AATT	2 cut(s)	315, 351
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	4 cut(s)	38, 133, 143, 240
MseI	TTAA	1 cut(s)	14
NlaIII	CATG	2 cut(s)	214, 363
NlaIV	GGNNCC	2 cut(s)	45, 91
NmuCI	GTSAC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	45, 91
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	46, 223
SetI	ASST	2 cut(s)	223, 259
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	315, 351
SspI	AATATT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	223
TaaI	ACNGT	3 cut(s)	76, 308, 329
TasI	AATT	2 cut(s)	315, 351
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	134, 295
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspRI	CASTG	2 cut(s)	134, 295
VpaK11BI	GGWCC	1 cut(s)	89
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.