Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015680.1

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 860

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 268 bp

atgggctctgaattaatgttattaacagatttgttttcttttcttttcagccctttcactgctggcagatatcacagtcttgtaattgaaaaggacagttttcctagtgaagaacttgaaattacagcatggaccgaggatggactgataatggctgctcgtcacaagaaatataggtatcttcagggtgtccagttccatcctgaaagtatcatcacttccgaaggcaggacaatcgttcgcaactttgtaaaactgatcgagaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

89

Amino Acids

10.31

Weight (kDa)

5.87

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	89, 119
ApeKI	GCWGC	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	202, 234
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	134, 207
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	145, 199
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	77, 98
BstC8I	GCNNGC	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	145, 199
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	145, 199
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	132
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	3 cut(s)	6, 51, 155
CviKI_1	RGCY	3 cut(s)	6, 51, 155
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	132
FaiI	YATR	2 cut(s)	130, 174
FatI	CATG	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	2 cut(s)	152, 186
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	10, 223
Hpy188III	TCNNGA	2 cut(s)	203, 262
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	77, 98
Hsp92II	CATG	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	5 cut(s)	48, 170, 206, 214, 216
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	122, 173
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	11, 84, 120
MnlI	CCTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	14, 23
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	14, 23
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	179
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	3 cut(s)	11, 84, 120
SspMI	CTAG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	77, 98
TaqI	TCGA	1 cut(s)	261
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	3 cut(s)	11, 84, 120
Tru1I	TTAA	2 cut(s)	14, 23
Tru9I	TTAA	2 cut(s)	14, 23
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	161
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	14
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.