Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

51239077 .. 51240444

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACTCCCACACACAGGAAAACCAGTACTCCCACACACATGAAAACGAGCACTCATCCACCAAAACGACGAGTCACTTCCAAATACATAACGTTGCTCTCTTCCTTCCTCTTCCTCCCTGTCCTCTATCTCTTCCTTCACGTCAAGCACAACCTCCACCTCACCGCCATCGTCGACCACTCACTGCCGCACCACGTCCAAGTCCCCGACATCCGAATCCGCTCCAGTTACACCTCCTACAAGACCTACCTCCAGCACCAGCTCAACAAGACCCTCAACCCTAAACTCCGCAAAGTCTGGACCACCCGCGACTGGGACCGCAAAATCCAGGTCTTCTCCGAGATTTTCACTCGGTTGAAGCAGGAAAAGCTCCTGTCAAATAACTCTCGGGCGTTGTGTATTGGCGCCCGAGTAGGGCAGGAGGTCCAGGCTCTGAAACGAATCGGGGTGAATGACTCGATCGGGATGGACCTCGTGCCCTACCCTCCCCTGGTTGTGGAGGGGGACTTTCACAGCCAGCCTTTTCAGAACGAGACGTTCGACTTCGAATTCTCTAACGTGTTCGACCACGCGCTGTACCCTAGGAAGTTCGTGGCGGAGATCGAACGGACGTTGAGGCCGAGCGGGGTGTGTGTGTTACACGTGGCGATATCGAAGCGGGGGGATAAGTACTCGGCCAACGACCTGTTCAGTGTGCGGCCATTGGTGGAGATGTTTCAGAGGTCCGAGTTGGTTTATGTCAGGAAGGTTGACGGGTTTGGGTTGGACACCGAGGTCGTCTTTCGGAAACGGGAAGTCAAACTCATCCAACAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

272

Amino Acids

31.73

Weight (kDa)

9.94

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	132 - 213	5.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	404
AccBSI	CCGCTC	2 cut(s)	222, 624
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	309, 572
AclI	AACGTT	1 cut(s)	92
AcoI	YGGCCR	2 cut(s)	675, 698
AcsI	RAATTY	1 cut(s)	548
AcvI	CACGTG	1 cut(s)	643
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	3 cut(s)	28, 578, 671
AfiI	CCNNNNNNNGG	6 cut(s)	15, 312, 313, 414, 490, 496
AflIII	ACRYGT	2 cut(s)	558, 640
AgsI	TTSAA	1 cut(s)	358
AjiI	CACGTC	2 cut(s)	142, 196
AjnI	CCWGG	3 cut(s)	327, 426, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	2 cut(s)	262, 370
AluI	AGCT	2 cut(s)	262, 370
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	433
Ama87I	CYCGRG	2 cut(s)	387, 408
AoxI	GGCC	3 cut(s)	617, 675, 698
ApoI	RAATTY	1 cut(s)	548
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspA2I	CCTAGG	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	407, 574
AspS9I	GGNCC	5 cut(s)	300, 316, 424, 469, 723
AsuHPI	GGTGA	2 cut(s)	154, 460
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	2 cut(s)	387, 408
AvaII	GGWCC	5 cut(s)	300, 316, 424, 469, 723
AvrII	CCTAGG	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	643
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	2 cut(s)	176, 460
BciT130I	CCWGG	3 cut(s)	329, 428, 491
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	2 cut(s)	188, 698
BlnI	CCTAGG	1 cut(s)	581
BlsI	GCNGC	2 cut(s)	189, 699
BmcAI	AGTACT	2 cut(s)	28, 671
Bme1390I	CCNGG	3 cut(s)	329, 428, 491
Bme18I	GGWCC	5 cut(s)	300, 316, 424, 469, 723
BmeT110I	CYCGRG	2 cut(s)	387, 408
BmgBI	CACGTC	2 cut(s)	142, 196
BmgT120I	GGNCC	5 cut(s)	300, 316, 424, 469, 723
BmiI	GGNNCC	2 cut(s)	317, 406
BmrFI	CCNGG	3 cut(s)	329, 428, 491
BmrI	ACTGGG	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	208, 236
Bpu14I	TTCGAA	1 cut(s)	546
BsaAI	YACGTR	1 cut(s)	643
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	489, 581, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	6 cut(s)	15, 312, 313, 414, 490, 496
Bse1I	ACTGG	3 cut(s)	24, 225, 317
BseBI	CCWGG	3 cut(s)	329, 428, 491
BseDI	CCNNGG	3 cut(s)	489, 581, 771
BseGI	GGATG	4 cut(s)	55, 210, 471, 804
BseLI	CCNNNNNNNGG	6 cut(s)	15, 312, 313, 414, 490, 496
BseNI	ACTGG	3 cut(s)	24, 225, 317
BseSI	GKGCMC	1 cut(s)	480
Bsh1236I	CGCG	2 cut(s)	309, 572
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	619, 677, 700
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	387, 408
BslFI	GGGAC	3 cut(s)	188, 329, 518
BslI	CCNNNNNNNGG	6 cut(s)	15, 312, 313, 414, 490, 496
BsmAI	GTCTC	1 cut(s)	527
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	3 cut(s)	188, 329, 518
BsnI	GGCC	3 cut(s)	619, 677, 700
BsoBI	CYCGRG	2 cut(s)	387, 408
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	53, 480
Bsp143I	GATC	2 cut(s)	459, 600
BspANI	GGCC	3 cut(s)	619, 677, 700
BspFNI	CGCG	2 cut(s)	309, 572
BspLI	GGNNCC	2 cut(s)	317, 406
BspT104I	TTCGAA	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	404
BsrBI	CCGCTC	2 cut(s)	222, 624
BsrI	ACTGG	3 cut(s)	24, 225, 317
BssECI	CCNNGG	3 cut(s)	489, 581, 771
BssMI	GATC	2 cut(s)	459, 600
BssNI	GRCGYC	1 cut(s)	405
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	329, 428, 491
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	3 cut(s)	106, 116, 137
BstACI	GRCGYC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	643
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	518
BstF5I	GGATG	4 cut(s)	55, 210, 471, 804
BstFNI	CGCG	2 cut(s)	309, 572
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	407, 574
BstKTI	GATC	2 cut(s)	462, 603
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	2 cut(s)	459, 600
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	3 cut(s)	329, 428, 491
BstSCI	CCNGG	3 cut(s)	327, 426, 489
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	2 cut(s)	309, 572
BstV2I	GAAGAC	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	619, 677, 700
BtrI	CACGTC	2 cut(s)	142, 196
BtsCI	GGATG	4 cut(s)	55, 210, 471, 804
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	182, 697
Cac8I	GCNNGC	1 cut(s)	518
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	2 cut(s)	407, 574
Cfr13I	GGNCC	5 cut(s)	300, 316, 424, 469, 723
Csp6I	GTAC	3 cut(s)	27, 577, 670
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	8 cut(s)	262, 370, 431, 516, 520, 619, 677, 700
CviKI_1	RGCY	8 cut(s)	262, 370, 431, 516, 520, 619, 677, 700
CviQI	GTAC	3 cut(s)	27, 577, 670
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	2 cut(s)	461, 602
DpnII	GATC	2 cut(s)	459, 600
DrdI	GACNNNNNNGTC	1 cut(s)	773
DseDI	GACNNNNNNGTC	1 cut(s)	773
EaeI	YGGCCR	2 cut(s)	675, 698
Eam1104I	CTCTTC	3 cut(s)	106, 116, 137
EarI	CTCTTC	3 cut(s)	106, 116, 137
EciI	GGCGGA	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	651
Eco47I	GGWCC	5 cut(s)	300, 316, 424, 469, 723
Eco72I	CACGTG	1 cut(s)	643
Eco88I	CYCGRG	2 cut(s)	387, 408
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	327, 426, 489
EcoRV	GATATC	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	581
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 89, 738
FaqI	GGGAC	3 cut(s)	188, 329, 518
FatI	CATG	1 cut(s)	39
FauI	CCCGC	3 cut(s)	314, 617, 651
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	188, 698
FokI	GGATG	4 cut(s)	42, 197, 478, 791
Fsp4HI	GCNGC	2 cut(s)	188, 698
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	2 cut(s)	406, 573
GluI	GCNGC	2 cut(s)	188, 698
GsuI	CTGGAG	2 cut(s)	208, 236
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	3 cut(s)	619, 677, 700
HhaI	GCGC	2 cut(s)	407, 574
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	2 cut(s)	405, 572
HinP1I	GCGC	2 cut(s)	405, 572
HincII	GTYRAC	2 cut(s)	175, 751
HindII	GTYRAC	2 cut(s)	175, 751
HinfI	GANTC	5 cut(s)	4, 72, 216, 441, 455
HphI	GGTGA	2 cut(s)	154, 460
Hpy166II	GTNNAC	2 cut(s)	175, 751
Hpy188I	TCNGA	7 cut(s)	215, 340, 435, 528, 720, 727, 786
Hpy188III	TCNNGA	3 cut(s)	298, 463, 742
Hpy8I	GTNNAC	2 cut(s)	175, 751
Hpy99I	CGWCG	2 cut(s)	72, 176
HpyAV	CCTTC	3 cut(s)	115, 146, 739
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	7 cut(s)	92, 141, 195, 536, 558, 611, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpySE526I	ACGT	7 cut(s)	92, 141, 195, 536, 558, 611, 642
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	2 cut(s)	405, 572
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	459, 600
LmnI	GCTCC	2 cut(s)	227, 375
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	7 cut(s)	92, 141, 195, 536, 558, 611, 642
MaeIII	GTNAC	3 cut(s)	73, 227, 636
MalI	GATC	2 cut(s)	461, 602
MbiI	CCGCTC	2 cut(s)	222, 624
MboI	GATC	2 cut(s)	459, 600
MboII	GAAGA	4 cut(s)	93, 103, 124, 325
MhlI	GDGCHC	2 cut(s)	53, 480
MluCI	AATT	1 cut(s)	548
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	81, 449
MmeI	TCCRAC	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	329, 428, 491
MvaI	CCWGG	3 cut(s)	329, 428, 491
MvnI	CGCG	2 cut(s)	309, 572
MwoI	GCNNNNNNNGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	2 cut(s)	459, 600
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	317, 406
NmeAIII	GCCGAG	2 cut(s)	645, 653
NmuCI	GTSAC	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	2 cut(s)	537, 617
PfeI	GAWTC	2 cut(s)	216, 441
PkrI	GCNGC	2 cut(s)	189, 699
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	2 cut(s)	80, 449
PluTI	GGCGCC	1 cut(s)	408
PmaCI	CACGTG	1 cut(s)	643
PmlI	CACGTG	1 cut(s)	643
PpsI	GAGTC	2 cut(s)	80, 449
Ppu21I	YACGTR	1 cut(s)	643
Psp1406I	AACGTT	1 cut(s)	92
Psp6I	CCWGG	3 cut(s)	327, 426, 489
PspCI	CACGTG	1 cut(s)	643
PspGI	CCWGG	3 cut(s)	327, 426, 489
PspN4I	GGNNCC	2 cut(s)	317, 406
PspPI	GGNCC	5 cut(s)	300, 316, 424, 469, 723
PstNI	CAGNNNCTG	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	3 cut(s)	28, 578, 671
RsaNI	GTAC	3 cut(s)	27, 577, 670
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	173
SatI	GCNGC	2 cut(s)	188, 698
Sau3AI	GATC	2 cut(s)	459, 600
Sau96I	GGNCC	5 cut(s)	300, 316, 424, 469, 723
ScaI	AGTACT	2 cut(s)	28, 671
SchI	GAGTC	2 cut(s)	81, 449
ScrFI	CCNGG	3 cut(s)	329, 428, 491
SduI	GDGCHC	2 cut(s)	53, 480
SfoI	GGCGCC	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	5 cut(s)	300, 316, 424, 469, 723
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	548
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	3 cut(s)	327, 426, 489
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	7 cut(s)	95, 144, 198, 539, 561, 614, 645
TaqI	TCGA	7 cut(s)	174, 458, 540, 546, 564, 603, 653
TasI	AATT	1 cut(s)	548
TatI	WGTACW	2 cut(s)	26, 669
TauI	GCSGC	2 cut(s)	190, 700
TfiI	GAWTC	2 cut(s)	216, 441
TscAI	CASTG	2 cut(s)	189, 697
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	2 cut(s)	189, 697
VpaK11BI	GGWCC	5 cut(s)	300, 316, 424, 469, 723
XapI	RAATTY	1 cut(s)	548
XmaJI	CCTAGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	582
ZrmI	AGTACT	2 cut(s)	28, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.