Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

62730221 .. 62732533

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTGCCCTCTTTCACTAACTCAAATCTTATCTTTATGTGCAGAACTAAAATCTGGTCTCAAATTGGGAAATGGGTTCGCTGCAAGAGCTTCAATGGTTGTCAATGAGACCAATTCGAATTCTTCGGTTTCGAAAAGAGGGCCAACAGTCCCATCATTGTTATCGACAATTATGATAGCTTCACCTACAATCTCTCGCCAGGGATGTTTTAGTGAAAAGTTAATGTATTTCATTCAAGGAATGGTGAAAGCTGGACGAGAGGTGAAGAATGAGAATAGAAAAATCCCGAGAGGAGTCTTGATCTCCCCGGGGCCAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTATTTGCCCTTTCACTGCTGGCGAGATATCACGATCTTGTAATTGAAAAGGACAGTTTTCCTAGTGAAGAACTTGAGATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGAATCTGCACTATAAGCTTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

178

Amino Acids

19.31

Weight (kDa)

8.96

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	93, 236, 425
AhdI	GACNNNNNGTC	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	198, 313
AluBI	AGCT	4 cut(s)	89, 179, 251, 528
AluI	AGCT	4 cut(s)	89, 179, 251, 528
Alw26I	GTCTC	2 cut(s)	62, 101
Ama87I	CYCGRG	2 cut(s)	286, 307
AoxI	GGCC	2 cut(s)	140, 311
ApeKI	GCWGC	2 cut(s)	80, 491
ApoI	RAATTY	1 cut(s)	118
AspS9I	GGNCC	4 cut(s)	140, 311, 365, 468
AsuC2I	CCSGG	2 cut(s)	308, 309
AsuHPI	GGTGA	3 cut(s)	174, 256, 274
AsuII	TTCGAA	2 cut(s)	116, 131
AvaI	CYCGRG	2 cut(s)	286, 307
AvaII	GGWCC	2 cut(s)	365, 468
BaeGI	GKGCMC	2 cut(s)	8, 322
BanI	GGYRCC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	67, 478
BccI	CCATC	2 cut(s)	160, 470
BciT130I	CCWGG	2 cut(s)	200, 315
BcnI	CCSGG	2 cut(s)	308, 309
BcoDI	GTCTC	2 cut(s)	62, 101
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	2 cut(s)	81, 492
BlsI	GCNGC	2 cut(s)	82, 493
Bme1390I	CCNGG	4 cut(s)	200, 308, 309, 315
Bme18I	GGWCC	2 cut(s)	365, 468
BmeRI	GACNNNNNGTC	1 cut(s)	371
BmeT110I	CYCGRG	2 cut(s)	286, 307
BmgT120I	GGNCC	4 cut(s)	140, 311, 365, 468
BmiI	GGNNCC	3 cut(s)	312, 321, 367
BmrFI	CCNGG	4 cut(s)	200, 308, 309, 315
Bpu14I	TTCGAA	2 cut(s)	116, 131
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	308, 309
BsaI	GGTCTC	2 cut(s)	62, 101
BsaJI	CCNNGG	6 cut(s)	199, 306, 307, 308, 314, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	200, 315
BseDI	CCNNGG	6 cut(s)	199, 306, 307, 308, 314, 471
BseGI	GGATG	2 cut(s)	209, 481
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	306
BseSI	GKGCMC	2 cut(s)	8, 322
BseXI	GCAGC	2 cut(s)	67, 478
BsgI	GTGCAG	2 cut(s)	60, 502
BshFI	GGCC	2 cut(s)	142, 313
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	2 cut(s)	286, 307
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	134, 359
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	62, 101
BsmFI	GGGAC	2 cut(s)	134, 359
BsnI	GGCC	2 cut(s)	142, 313
Bso31I	GGTCTC	2 cut(s)	62, 101
BsoBI	CYCGRG	2 cut(s)	286, 307
Bsp119I	TTCGAA	2 cut(s)	116, 131
Bsp1286I	GDGCHC	2 cut(s)	8, 322
Bsp143I	GATC	2 cut(s)	300, 412
BspANI	GGCC	2 cut(s)	142, 313
BspLI	GGNNCC	3 cut(s)	312, 321, 367
BspT104I	TTCGAA	2 cut(s)	116, 131
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	2 cut(s)	62, 101
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	6 cut(s)	199, 306, 307, 308, 314, 471
BssMI	GATC	2 cut(s)	300, 412
Bst2UI	CCWGG	2 cut(s)	200, 315
Bst4CI	ACNGT	3 cut(s)	148, 352, 434
BstBI	TTCGAA	2 cut(s)	116, 131
BstC8I	GCNNGC	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	209, 481
BstKTI	GATC	2 cut(s)	303, 415
BstMAI	GTCTC	2 cut(s)	62, 101
BstMBI	GATC	2 cut(s)	300, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 525
BstNI	CCWGG	2 cut(s)	200, 315
BstSCI	CCNGG	4 cut(s)	198, 306, 307, 313
BstSLI	GKGCMC	2 cut(s)	8, 322
BstV1I	GCAGC	2 cut(s)	67, 478
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	142, 313
BtsCI	GGATG	2 cut(s)	209, 481
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	399
Cfr13I	GGNCC	4 cut(s)	140, 311, 365, 468
Cfr9I	CCCGGG	1 cut(s)	307
CviAII	CATG	1 cut(s)	465
CviJI	RGCY	7 cut(s)	89, 142, 179, 251, 313, 491, 528
CviKI_1	RGCY	7 cut(s)	89, 142, 179, 251, 313, 491, 528
DpnI	GATC	2 cut(s)	302, 414
DpnII	GATC	2 cut(s)	300, 412
DriI	GACNNNNNGTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	1 cut(s)	371
Eco31I	GGTCTC	2 cut(s)	62, 101
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	365, 468
Eco88I	CYCGRG	2 cut(s)	286, 307
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	198, 313
EcoRV	GATATC	1 cut(s)	407
FaeI	CATG	1 cut(s)	468
FaiI	YATR	5 cut(s)	37, 173, 466, 510, 524
FaqI	GGGAC	2 cut(s)	134, 359
FatI	CATG	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	81, 492
FokI	GGATG	2 cut(s)	216, 488
Fsp4HI	GCNGC	2 cut(s)	81, 492
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	2 cut(s)	81, 492
HaeIII	GGCC	2 cut(s)	142, 313
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	526
HinfI	GANTC	3 cut(s)	294, 329, 513
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	174, 256, 274
Hpy188III	TCNNGA	4 cut(s)	286, 298, 333, 410
HpyCH4III	ACNGT	3 cut(s)	148, 352, 434
HpyCH4V	TGCA	4 cut(s)	41, 83, 346, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 525
Hsp92II	CATG	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	300, 412
LpnPI	CCDG	9 cut(s)	39, 185, 212, 237, 300, 318, 321, 327, 383
Lsp1109I	GCAGC	2 cut(s)	67, 478
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	302, 414
MboI	GATC	2 cut(s)	300, 412
MboII	GAAGA	3 cut(s)	114, 277, 458
MhlI	GDGCHC	2 cut(s)	8, 322
MluCI	AATT	5 cut(s)	62, 112, 118, 168, 420
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	18, 131, 253, 284, 466
MseI	TTAA	2 cut(s)	221, 530
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	4 cut(s)	200, 308, 309, 315
MvaI	CCWGG	2 cut(s)	200, 315
MwoI	GCNNNNNNNGC	2 cut(s)	86, 525
NciI	CCSGG	2 cut(s)	308, 309
NdeII	GATC	2 cut(s)	300, 412
NlaIII	CATG	1 cut(s)	468
NlaIV	GGNNCC	3 cut(s)	312, 321, 367
NmuCI	GTSAC	1 cut(s)	497
NspV	TTCGAA	2 cut(s)	116, 131
PfeI	GAWTC	2 cut(s)	329, 513
PkrI	GCNGC	2 cut(s)	82, 493
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	198, 313
PspGI	CCWGG	2 cut(s)	198, 313
PspN4I	GGNNCC	3 cut(s)	312, 321, 367
PspPI	GGNCC	4 cut(s)	140, 311, 365, 468
PspPPI	RGGWCCY	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	221, 530
SatI	GCNGC	2 cut(s)	81, 492
Sau3AI	GATC	2 cut(s)	300, 412
Sau96I	GGNCC	4 cut(s)	140, 311, 365, 468
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	4 cut(s)	200, 308, 309, 315
SduI	GDGCHC	2 cut(s)	8, 322
SetI	ASST	6 cut(s)	91, 181, 187, 253, 264, 530
SfuI	TTCGAA	2 cut(s)	116, 131
SinI	GGWCC	2 cut(s)	365, 468
SmaI	CCCGGG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	62, 112, 118, 168, 420
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	4 cut(s)	198, 306, 307, 313
TaaI	ACNGT	3 cut(s)	148, 352, 434
TaqI	TCGA	3 cut(s)	116, 131, 164
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	5 cut(s)	62, 112, 118, 168, 420
TfiI	GAWTC	2 cut(s)	329, 513
Tru1I	TTAA	2 cut(s)	221, 530
Tru9I	TTAA	2 cut(s)	221, 530
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	80, 491
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	220
TspMI	CCCGGG	1 cut(s)	307
TspRI	CASTG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	365, 468
XapI	RAATTY	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.