Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018709.1

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

22389 .. 23331

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018709.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgggagagctcggatgtcactttgaagtttatcgcaacgatgaattaacagtggatgaactaaaaaggaaaaatcccagaggagtcttgatctccccagggccaggggcaccccaagattctggaatatcattgcaaactgtgttggagttaggacccattgtccccttgtttggtgtgtgtatgggtctgcagtgcattggggaggcttttggagggaatgttgttcgttctccttatggtgttgtgcatgggaagagctctcccgtgtattataatgagaaggaggaagacagcttgtttgctggactatcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

106

Amino Acids

11.37

Weight (kDa)

5.05

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	104, 173
AgsI	TTSAA	1 cut(s)	26
AhdI	GACNNNNNGTC	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	97, 103
AluBI	AGCT	3 cut(s)	10, 261, 297
AluI	AGCT	3 cut(s)	10, 261, 297
Alw21I	GWGCWC	2 cut(s)	12, 263
AoxI	GGCC	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	2 cut(s)	101, 155
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	2 cut(s)	12, 263
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	12, 263
BciT130I	CCWGG	2 cut(s)	99, 105
BfmI	CTRYAG	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	99, 105
Bme18I	GGWCC	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	101, 155
BmiI	GGNNCC	2 cut(s)	111, 157
BmrFI	CCNGG	2 cut(s)	99, 105
BpiI	GAAGAC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	97, 98, 104
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 173
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	99, 105
BseDI	CCNNGG	3 cut(s)	97, 98, 104
BseGI	GGATG	2 cut(s)	20, 61
BseLI	CCNNNNNNNGG	2 cut(s)	104, 173
BseMI	GCAATG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	12, 263
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	104, 173
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	12, 112, 263
Bsp143I	GATC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	111, 157
BspMAI	CTGCAG	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	97, 98, 104
BssMI	GATC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	99, 105
Bst4CI	ACNGT	2 cut(s)	52, 142
Bst6I	CTCTTC	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	20, 61
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstNI	CCWGG	2 cut(s)	99, 105
BstSCI	CCNGG	2 cut(s)	97, 103
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	20, 61
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	57, 200
Cfr13I	GGNCC	2 cut(s)	101, 155
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	5 cut(s)	10, 103, 209, 261, 297
CviKI_1	RGCY	5 cut(s)	10, 103, 209, 261, 297
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	2 cut(s)	10, 261
Eco24I	GRGCYC	2 cut(s)	12, 263
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	2 cut(s)	10, 261
EcoICRI	GAGCTC	2 cut(s)	10, 261
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	97, 103
EcoT38I	GRGCYC	2 cut(s)	12, 263
FaeI	CATG	1 cut(s)	254
FaiI	YATR	4 cut(s)	185, 240, 252, 276
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	250
FokI	GGATG	2 cut(s)	27, 68
FriOI	GRGCYC	2 cut(s)	12, 263
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	254
HinfI	GANTC	2 cut(s)	84, 119
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	88, 123
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	52, 142
HpyCH4V	TGCA	4 cut(s)	136, 193, 198, 250
Hsp92II	CATG	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	251
LpnPI	CCDG	7 cut(s)	84, 90, 91, 108, 111, 117, 291
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	268, 302
MhlI	GDGCHC	3 cut(s)	12, 112, 263
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	74, 199, 209, 280
MseI	TTAA	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	99, 105
MvaI	CCWGG	2 cut(s)	99, 105
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	111, 157
NmuCI	GTSAC	1 cut(s)	17
PasI	CCCWGGG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	276
Psp124BI	GAGCTC	2 cut(s)	12, 263
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	97, 103
PspGI	CCWGG	2 cut(s)	97, 103
PspN4I	GGNNCC	2 cut(s)	111, 157
PspPI	GGNCC	2 cut(s)	101, 155
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	195
SacI	GAGCTC	2 cut(s)	12, 263
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	2 cut(s)	101, 155
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	99, 105
SduI	GDGCHC	3 cut(s)	12, 112, 263
SetI	ASST	3 cut(s)	12, 263, 299
SfcI	CTRYAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	155
Sse9I	AATT	1 cut(s)	44
SstI	GAGCTC	2 cut(s)	12, 263
StyD4I	CCNGG	2 cut(s)	97, 103
TaaI	ACNGT	2 cut(s)	52, 142
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	2 cut(s)	57, 200
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	57, 72
TspRI	CASTG	2 cut(s)	57, 200
VpaK11BI	GGWCC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.