Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8785785 .. 8787914

Gene Structure 2130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24909.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAGAATCGAATTCGATACCTTCCGTTGTTATCAATTCCTCTAAACAGAATGGTCCTATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTACAATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGAAAAGAAAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCAAACCCTTTCATTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATACATTTCCTAGTGATGAGCTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGAAAGTACAAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAATTTCATCAAAATCGTAGAGAAAAAGGATTCCGAGAAGCTGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

222

Amino Acids

24.69

Weight (kDa)

5.66

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	23 - 210	2.7e-55	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	92 - 195	5.9e-11	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	3 cut(s)	145, 340, 619
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	2 cut(s)	220, 551
AfiI	CCNNNNNNNGG	3 cut(s)	112, 215, 284
AgsI	TTSAA	2 cut(s)	137, 572
AjnI	CCWGG	2 cut(s)	208, 214
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	6 cut(s)	87, 121, 172, 372, 493, 661
AluI	AGCT	6 cut(s)	87, 121, 172, 372, 493, 661
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	494
Aor13HI	TCCGGA	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	13
Asp718I	GGTACC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	56, 212, 266
AsuHPI	GGTGA	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	3 cut(s)	56, 212, 266
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	2 cut(s)	210, 216
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	210, 216
Bme18I	GGWCC	3 cut(s)	56, 212, 266
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	56, 212, 266
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	210, 216
BoxI	GACNNNNGTC	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 215, 284
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	154
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	2 cut(s)	210, 216
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	3 cut(s)	112, 215, 284
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	112, 215, 284
BsmAI	GTCTC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	1 cut(s)	462
BspACI	CCGC	3 cut(s)	145, 340, 619
BspCNI	CTCAG	1 cut(s)	592
BspEI	TCCGGA	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	210, 216
Bst4CI	ACNGT	3 cut(s)	163, 253, 455
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	600
BstEII	GGTNACC	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	1 cut(s)	462
BstNI	CCWGG	2 cut(s)	210, 216
BstPAI	GACNNNNGTC	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	208, 214
BstV1I	GCAGC	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	577
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	56, 212, 266
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	219, 550
CviAII	CATG	2 cut(s)	362, 507
CviJI	RGCY	8 cut(s)	87, 121, 172, 372, 408, 493, 533, 661
CviKI_1	RGCY	8 cut(s)	87, 121, 172, 372, 408, 493, 533, 661
CviQI	GTAC	2 cut(s)	219, 550
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	449
Eco47I	GGWCC	3 cut(s)	56, 212, 266
Eco53kI	GAGCTC	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	494
Eco91I	GGTNACC	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	208, 214
EcoRV	GATATC	1 cut(s)	449
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	495
FaeI	CATG	2 cut(s)	365, 510
FatI	CATG	2 cut(s)	361, 506
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	1 cut(s)	564
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	1 cut(s)	534
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	2 cut(s)	365, 510
HinfI	GANTC	3 cut(s)	8, 230, 650
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	142, 382
Hpy188I	TCNGA	2 cut(s)	266, 655
Hpy188III	TCNNGA	5 cut(s)	67, 227, 417, 460, 581
Hpy8I	GTNNAC	2 cut(s)	142, 382
HpyAV	CCTTC	2 cut(s)	33, 398
HpyCH4III	ACNGT	3 cut(s)	163, 253, 455
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	3 cut(s)	247, 304, 361
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	665
Hsp92II	CATG	2 cut(s)	365, 510
Kpn2I	TCCGGA	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	462
LguI	GCTCTTC	1 cut(s)	162
Lsp1109I	GCAGC	1 cut(s)	520
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	3 cut(s)	342, 499, 539
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	3 cut(s)	179, 413, 527
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	6 cut(s)	13, 37, 76, 572, 612, 622
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	52, 185, 234, 320, 490, 595
Mph1103I	ATGCAT	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	580
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	210, 216
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	210, 216
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	2 cut(s)	365, 510
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	342, 539
NsiI	ATGCAT	1 cut(s)	363
PaeR7I	CTCGAG	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	8, 650
PflMI	CCANNNNNTGG	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	614
PsiI	TTATAA	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	208, 214
PspEI	GGTNACC	1 cut(s)	342
PspGI	CCWGG	2 cut(s)	208, 214
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	3 cut(s)	56, 212, 266
PspXI	VCTCGAGB	1 cut(s)	494
RsaI	GTAC	2 cut(s)	220, 551
RsaNI	GTAC	2 cut(s)	219, 550
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	1 cut(s)	462
Sau96I	GGNCC	3 cut(s)	56, 212, 266
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	210, 216
SduI	GDGCHC	1 cut(s)	495
SexAI	ACCWGGT	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	494
SinI	GGWCC	3 cut(s)	56, 212, 266
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	225, 494
SmoI	CTYRAG	2 cut(s)	225, 494
Sse9I	AATT	6 cut(s)	13, 37, 76, 572, 612, 622
SsiI	CCGC	3 cut(s)	145, 340, 619
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	208, 214
TaaI	ACNGT	3 cut(s)	163, 253, 455
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	4 cut(s)	11, 17, 465, 495
TasI	AATT	6 cut(s)	13, 37, 76, 572, 612, 622
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	8, 650
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	342, 539
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	342, 539
TspDTI	ATGAA	4 cut(s)	168, 424, 566, 616
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	3 cut(s)	56, 212, 266
XapI	RAATTY	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	494
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.