Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

38917886 .. 38955911

Gene Structure 38026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGCCGCGTGTGACATCTCGGGCCTCTCGAAACAACCAAAGCTGCTCCCTTTCTCACCCAAAACCCCGCAAAACCCTCGCCCCACTTTAATCTATGTGCCCTCTTTCACGAACTCAAAACTGAAATCTGGTCTCAAATTGGGAAATGGGTTCGCTGCAAAAGCTTCAATGGTTGTCAATGAGACCGATTCGAAGTCTTCAGTTTCTGAAAAGAGGGCCAACAGCCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTCTCGCTGAGTTTGTTTCTGTTTTCCTTTTTTCAATTTGTTGGATTTGATAAGCCATGGAAAAATCCTAGAGGAGTCTTGATCTCCCCGGGGCCAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGGAATGTTATTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACATATTGGGGGTTTGGTTTGTTGCTAAAAAAATGATGTATGCAAGTGTGGTGGAATTAAATGTCCAAACCCTTTCATTGCTGGCGAGATATCACGATCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGAATCTGCACTATAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

249

Amino Acids

27.4

Weight (kDa)

8.72

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	80 - 246	2.5e-09	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	370
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 71
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	3 cut(s)	365, 434, 435
AgsI	TTSAA	4 cut(s)	171, 305, 644, 674
AhdI	GACNNNNNGTC	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	6 cut(s)	46, 167, 258, 480, 516, 747
AluI	AGCT	6 cut(s)	46, 167, 258, 480, 516, 747
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	140, 179
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	2 cut(s)	22, 358
AoxI	GGCC	3 cut(s)	25, 219, 362
ApeKI	GCWGC	4 cut(s)	5, 46, 158, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspS9I	GGNCC	5 cut(s)	25, 219, 362, 416, 687
AsuC2I	CCSGG	2 cut(s)	359, 360
AsuHPI	GGTGA	2 cut(s)	51, 253
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	2 cut(s)	22, 358
AvaII	GGWCC	2 cut(s)	416, 687
BaeGI	GKGCMC	2 cut(s)	105, 373
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	2 cut(s)	192, 516
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	33, 145, 697
BccI	CCATC	2 cut(s)	239, 689
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	2 cut(s)	359, 360
BcoDI	GTCTC	2 cut(s)	140, 179
BfaI	CTAG	2 cut(s)	339, 660
BisI	GCNGC	5 cut(s)	6, 9, 47, 159, 711
BlsI	GCNGC	5 cut(s)	7, 10, 48, 160, 712
Bme1390I	CCNGG	3 cut(s)	359, 360, 366
Bme18I	GGWCC	2 cut(s)	416, 687
BmeRI	GACNNNNNGTC	1 cut(s)	422
BmeT110I	CYCGRG	2 cut(s)	22, 358
BmgT120I	GGNCC	5 cut(s)	25, 219, 362, 416, 687
BmiI	GGNNCC	3 cut(s)	363, 372, 418
BmrFI	CCNGG	3 cut(s)	359, 360, 366
BpiI	GAAGAC	2 cut(s)	192, 516
Bpu14I	TTCGAA	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	359, 360
BsaI	GGTCTC	2 cut(s)	140, 179
BsaJI	CCNNGG	6 cut(s)	326, 357, 358, 359, 365, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 434, 435
Bse3DI	GCAATG	2 cut(s)	392, 611
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	6 cut(s)	326, 357, 358, 359, 365, 690
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	3 cut(s)	365, 434, 435
BseMI	GCAATG	2 cut(s)	392, 611
BseMII	CTCAG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	357
BseSI	GKGCMC	2 cut(s)	105, 373
BseXI	GCAGC	3 cut(s)	33, 145, 697
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	27, 221, 364
BshNI	GGYRCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	2 cut(s)	22, 358
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	365, 434, 435
BsmAI	GTCTC	2 cut(s)	140, 179
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	27, 221, 364
Bso31I	GGTCTC	2 cut(s)	140, 179
BsoBI	CYCGRG	2 cut(s)	22, 358
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	105, 373, 482
Bsp143I	GATC	2 cut(s)	351, 631
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	2 cut(s)	9, 71
BspANI	GGCC	3 cut(s)	27, 221, 364
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	363, 372, 418
BspQI	GCTCTTC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	370
BspTNI	GGTCTC	2 cut(s)	140, 179
BsrDI	GCAATG	2 cut(s)	392, 611
BssECI	CCNNGG	6 cut(s)	326, 357, 358, 359, 365, 690
BssMI	GATC	2 cut(s)	351, 631
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	403, 653
Bst6I	CTCTTC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	700
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	354, 634
BstMAI	GTCTC	2 cut(s)	140, 179
BstMBI	GATC	2 cut(s)	351, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 744
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	357, 358, 364
BstSLI	GKGCMC	2 cut(s)	105, 373
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	33, 145, 697
BstV2I	GAAGAC	2 cut(s)	192, 516
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	27, 221, 364
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	700
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	5 cut(s)	25, 219, 362, 416, 687
Cfr9I	CCCGGG	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	3 cut(s)	327, 470, 684
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	2 cut(s)	353, 633
DpnII	GATC	2 cut(s)	351, 631
DriI	GACNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	470
Eam1105I	GACNNNNNGTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	482
Eco31I	GGTCTC	2 cut(s)	140, 179
Eco32I	GATATC	1 cut(s)	626
Eco47I	GGWCC	2 cut(s)	416, 687
Eco53kI	GAGCTC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	2 cut(s)	22, 358
EcoICRI	GAGCTC	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	330, 473, 687
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	326, 469, 683
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	6, 9, 47, 159, 711
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	5 cut(s)	6, 9, 47, 159, 711
FspBI	CTAG	2 cut(s)	339, 660
GluI	GCNGC	5 cut(s)	6, 9, 47, 159, 711
HaeIII	GGCC	3 cut(s)	27, 221, 364
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	3 cut(s)	330, 473, 687
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	4 cut(s)	191, 345, 380, 732
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	51, 253
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	5 cut(s)	31, 112, 349, 384, 629
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	2 cut(s)	403, 653
HpyCH4V	TGCA	5 cut(s)	161, 397, 469, 578, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 744
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	330, 473, 687
Kzo9I	GATC	2 cut(s)	351, 631
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	7 cut(s)	117, 351, 369, 372, 378, 510, 602
Lsp1109I	GCAGC	3 cut(s)	33, 145, 697
MaeI	CTAG	2 cut(s)	339, 660
MaeIII	GTNAC	2 cut(s)	14, 716
MalI	GATC	2 cut(s)	353, 633
MboI	GATC	2 cut(s)	351, 631
MboII	GAAGA	4 cut(s)	192, 487, 521, 677
MhlI	GDGCHC	3 cut(s)	105, 373, 482
MluCI	AATT	6 cut(s)	140, 247, 305, 590, 639, 675
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	2 cut(s)	292, 387
MnlI	CCTC	7 cut(s)	38, 90, 115, 210, 335, 499, 685
MseI	TTAA	2 cut(s)	92, 593
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	3 cut(s)	359, 360, 366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	164, 744
NciI	CCSGG	2 cut(s)	359, 360
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	2 cut(s)	351, 631
NlaIII	CATG	3 cut(s)	330, 473, 687
NlaIV	GGNNCC	3 cut(s)	363, 372, 418
NmuCI	GTSAC	2 cut(s)	14, 716
NspV	TTCGAA	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	191, 380, 732
PkrI	GCNGC	5 cut(s)	7, 10, 48, 160, 712
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	363, 372, 418
PspPI	GGNCC	5 cut(s)	25, 219, 362, 416, 687
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	92, 593
SatI	GCNGC	5 cut(s)	6, 9, 47, 159, 711
Sau3AI	GATC	2 cut(s)	351, 631
Sau96I	GGNCC	5 cut(s)	25, 219, 362, 416, 687
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	3 cut(s)	359, 360, 366
SduI	GDGCHC	3 cut(s)	105, 373, 482
SetI	ASST	7 cut(s)	48, 169, 260, 266, 482, 518, 749
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	2 cut(s)	416, 687
SmaI	CCCGGG	1 cut(s)	360
Sse9I	AATT	6 cut(s)	140, 247, 305, 590, 639, 675
SsiI	CCGC	2 cut(s)	9, 71
SspMI	CTAG	2 cut(s)	339, 660
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	357, 358, 364
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	403, 653
TaqI	TCGA	2 cut(s)	32, 194
TaqII	GACCGA	2 cut(s)	203, 704
TasI	AATT	6 cut(s)	140, 247, 305, 590, 639, 675
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	191, 380, 732
Tru1I	TTAA	2 cut(s)	92, 593
Tru9I	TTAA	2 cut(s)	92, 593
TseFI	GTSAC	2 cut(s)	14, 716
TseI	GCWGC	4 cut(s)	5, 46, 158, 710
Tsp45I	GTSAC	2 cut(s)	14, 716
TspDTI	ATGAA	1 cut(s)	600
TspMI	CCCGGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	416, 687
XmaI	CCCGGG	1 cut(s)	358
XspI	CTAG	2 cut(s)	339, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.