Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8836835 .. 8839609

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAACCCAAGTCTGGCTCCACCACTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGTCCAATCATCGTGATTGATAATTACGACAGCTTCACATACAATCTCTGCCAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGAAAAAAAAAAATCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCAAACCCTTTCATTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATACATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTAATGGCTGCCCGTCACAGAAAGTACAAGCATATACAGGGAGTCCAATTTCATCCGGAGAGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAATTTCATCAAAATAGTAGAGAAAAAGGAGTCCGAGAAGCTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

276

Amino Acids

30.46

Weight (kDa)

7.67

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	77 - 264	1.4e-55	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	146 - 249	7.3e-11	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	755
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	2 cut(s)	274, 377
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	6 cut(s)	5, 64, 167, 307, 502, 781
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	3 cut(s)	20, 382, 713
AfiI	CCNNNNNNNGG	5 cut(s)	47, 120, 274, 377, 446
AgsI	TTSAA	3 cut(s)	38, 161, 299
AjnI	CCWGG	2 cut(s)	370, 376
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	6 cut(s)	152, 249, 283, 334, 534, 823
AluI	AGCT	6 cut(s)	152, 249, 283, 334, 534, 823
Alw26I	GTCTC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	211, 695
ApoI	RAATTY	1 cut(s)	175
Asp718I	GGTACC	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	218, 374, 428
AsuHPI	GGTGA	1 cut(s)	498
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	218, 428
BanI	GGYRCC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	223, 682
BccI	CCATC	1 cut(s)	674
BciT130I	CCWGG	2 cut(s)	372, 378
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	284, 645
BisI	GCNGC	4 cut(s)	6, 64, 212, 696
BlsI	GCNGC	4 cut(s)	7, 65, 213, 697
Bme1390I	CCNGG	2 cut(s)	372, 378
Bme18I	GGWCC	2 cut(s)	218, 428
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	218, 374, 428
BmiI	GGNNCC	2 cut(s)	52, 382
BmrFI	CCNGG	2 cut(s)	372, 378
BmsI	GCATC	1 cut(s)	278
BoxI	GACNNNNGTC	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 120, 274, 377, 446
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	372, 378
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	2 cut(s)	293, 739
BseLI	CCNNNNNNNGG	5 cut(s)	47, 120, 274, 377, 446
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	223, 682
BshFI	GGCC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	743
BslI	CCNNNNNNNGG	5 cut(s)	47, 120, 274, 377, 446
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	656
Bsp13I	TCCGGA	1 cut(s)	742
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	6 cut(s)	5, 64, 167, 307, 502, 781
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	754
BspEI	TCCGGA	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	52, 382
BspQI	GCTCTTC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	624
BssSI	CACGAG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	620
Bst2UI	CCWGG	2 cut(s)	372, 378
Bst4CI	ACNGT	3 cut(s)	325, 415, 617
Bst6I	CTCTTC	2 cut(s)	119, 324
BstAUI	TGTACA	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	207, 762
BstEII	GGTNACC	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	293, 739
BstKTI	GATC	1 cut(s)	627
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	1 cut(s)	624
BstNI	CCWGG	2 cut(s)	372, 378
BstPAI	GACNNNNGTC	1 cut(s)	776
BstPI	GGTNACC	1 cut(s)	504
BstSCI	CCNGG	2 cut(s)	370, 376
BstV1I	GCAGC	2 cut(s)	223, 682
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	293, 739
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	473
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	218, 374, 428
Csp6I	GTAC	3 cut(s)	19, 381, 712
CviAII	CATG	3 cut(s)	215, 524, 669
CviQI	GTAC	3 cut(s)	19, 381, 712
DdeI	CTNAG	2 cut(s)	207, 762
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	119, 324
EarI	CTCTTC	2 cut(s)	119, 324
EciI	GGCGGA	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	218, 428
Eco88I	CYCGRG	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	370, 376
EcoRV	GATATC	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	525
FaeI	CATG	3 cut(s)	218, 527, 672
FatI	CATG	3 cut(s)	214, 523, 668
Fnu4HI	GCNGC	4 cut(s)	6, 64, 212, 696
FokI	GGATG	2 cut(s)	300, 726
Fsp4HI	GCNGC	4 cut(s)	6, 64, 212, 696
FspBI	CTAG	2 cut(s)	284, 645
GluI	GCNGC	4 cut(s)	6, 64, 212, 696
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	1 cut(s)	743
Hin1II	CATG	3 cut(s)	218, 527, 672
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	6 cut(s)	97, 127, 170, 392, 729, 812
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	3 cut(s)	85, 304, 544
Hpy188I	TCNGA	2 cut(s)	428, 817
Hpy188III	TCNNGA	5 cut(s)	229, 389, 579, 622, 743
Hpy8I	GTNNAC	3 cut(s)	85, 304, 544
HpyAV	CCTTC	3 cut(s)	84, 195, 560
HpyCH4III	ACNGT	3 cut(s)	325, 415, 617
HpyCH4V	TGCA	3 cut(s)	409, 466, 523
HpyF3I	CTNAG	2 cut(s)	207, 762
Hsp92II	CATG	3 cut(s)	218, 527, 672
Kpn2I	TCCGGA	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	384
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	624
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	223, 682
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	2 cut(s)	284, 645
MaeIII	GTNAC	3 cut(s)	504, 661, 701
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	6 cut(s)	23, 26, 136, 341, 575, 689
MfeI	CAATTG	1 cut(s)	774
MluCI	AATT	6 cut(s)	175, 199, 238, 734, 774, 784
MlyI	GAGTC	4 cut(s)	136, 386, 738, 821
MnlI	CCTC	7 cut(s)	99, 214, 347, 396, 482, 652, 757
Mph1103I	ATGCAT	1 cut(s)	525
MroI	TCCGGA	1 cut(s)	742
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	2 cut(s)	372, 378
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	372, 378
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	3 cut(s)	218, 527, 672
NlaIV	GGNNCC	2 cut(s)	52, 382
NmuCI	GTSAC	2 cut(s)	504, 701
NsiI	ATGCAT	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	656
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	97, 170
PflMI	CCANNNNNTGG	2 cut(s)	274, 377
PkrI	GCNGC	4 cut(s)	7, 65, 213, 697
PleI	GAGTC	4 cut(s)	135, 386, 737, 820
PpsI	GAGTC	4 cut(s)	135, 386, 737, 820
PshAI	GACNNNNGTC	1 cut(s)	776
PsiI	TTATAA	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	370, 376
PspEI	GGTNACC	1 cut(s)	504
PspGI	CCWGG	2 cut(s)	370, 376
PspN4I	GGNNCC	2 cut(s)	52, 382
PspPI	GGNCC	3 cut(s)	218, 374, 428
PspXI	VCTCGAGB	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	20, 382, 713
RsaNI	GTAC	3 cut(s)	19, 381, 712
RseI	CAYNNNNRTG	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	6, 64, 212, 696
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	3 cut(s)	218, 374, 428
SchI	GAGTC	4 cut(s)	136, 386, 738, 821
ScrFI	CCNGG	2 cut(s)	372, 378
SetI	ASST	9 cut(s)	154, 187, 251, 285, 336, 536, 607, 663, 825
SfaNI	GCATC	1 cut(s)	278
Sfr274I	CTCGAG	1 cut(s)	656
SinI	GGWCC	2 cut(s)	218, 428
SlaI	CTCGAG	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	387, 656
SmoI	CTYRAG	2 cut(s)	387, 656
Sse9I	AATT	6 cut(s)	175, 199, 238, 734, 774, 784
SsiI	CCGC	6 cut(s)	5, 64, 167, 307, 502, 781
SspMI	CTAG	2 cut(s)	284, 645
StyD4I	CCNGG	2 cut(s)	370, 376
TaaI	ACNGT	3 cut(s)	325, 415, 617
TaqI	TCGA	5 cut(s)	155, 173, 179, 627, 657
TasI	AATT	6 cut(s)	175, 199, 238, 734, 774, 784
TatI	WGTACW	2 cut(s)	18, 711
TauI	GCSGC	2 cut(s)	8, 66
TfiI	GAWTC	2 cut(s)	97, 170
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	2 cut(s)	504, 701
TseI	GCWGC	2 cut(s)	211, 695
Tsp45I	GTSAC	2 cut(s)	504, 701
TspDTI	ATGAA	5 cut(s)	330, 586, 666, 728, 778
TspGWI	ACGGA	2 cut(s)	103, 178
TspRI	CASTG	1 cut(s)	473
Van91I	CCANNNNNTGG	2 cut(s)	274, 377
VpaK11BI	GGWCC	2 cut(s)	218, 428
XapI	RAATTY	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	656
XspI	CTAG	2 cut(s)	284, 645
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.