Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

63805009 .. 63805278

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGGCTGCTCGTCACAAGAAATATAGGTATATTCAGGGTGTCCAGTTCCATCCTGAAAGTATCATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAAAACTGATCGAGAAAAGTGAGTCGGAATCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

46

Amino Acids

5.41

Weight (kDa)

9.3

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	1 - 34	5.5e-09	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
BccI	CCATC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	49
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
FaiI	YATR	2 cut(s)	24, 30
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	122, 128
Hpy188I	TCNGA	3 cut(s)	73, 127, 133
Hpy188III	TCNNGA	2 cut(s)	53, 112
HpyAV	CCTTC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	20, 56, 64, 66
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	105
NdeII	GATC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	131
SetI	ASST	1 cut(s)	29
SgeI	CNNG	7 cut(s)	21, 28, 47, 55, 65, 91, 124
Sse9I	AATT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.