Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

60872687 .. 60875394

Gene Structure 2708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGCCGCAGTGACATCACATGCCTCTCTGAAACAACCAAAGCTGCTCCCTTTCTCACCCAAAACCCCGCAAAACCCTCGCCCCACTTTAATCTCTGTGCCCTCTTTCACCAACTCAAAACTGAAATCTGGTCTCAAATTGGGAAATGGGTTCGCTGCAAAAGCTTCAATGGTTGTCAATGAGACCAATTCGAAGTCTTCAGTTTCTGAAAAGAGGGCCAACAGCCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTCTGCCAGTATATGGGAGAGCTCGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACAGTGGATGAACTAAAAAGGAAAAATCCCAGAGGAGTCTTGATCTCCCCAGGGCCAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTATTTGGTGTGTGTATGGGTCTGCAGTGCATTGGGGAGGCTTTTGGAGGGAATGTTGTTCGTTCTCCTTATGGTGTCGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGTGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGTATCTTCAGGGTGTCCAGTTCCATCCTGAAAGTATCATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAAAACTGATCGAGAAAAGTGAGTCGGAATCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

279

Amino Acids

30.6

Weight (kDa)

6.61

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	80 - 267	4.2e-53	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	149 - 252	2e-11	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	2 cut(s)	9, 71
AcuI	CTGAAG	2 cut(s)	186, 716
AfiI	CCNNNNNNNGG	4 cut(s)	283, 386, 455, 777
AgsI	TTSAA	4 cut(s)	171, 308, 638, 668
AhdI	GACNNNNNGTC	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	379, 385
AluBI	AGCT	6 cut(s)	46, 167, 258, 292, 543, 579
AluI	AGCT	6 cut(s)	46, 167, 258, 292, 543, 579
Alw21I	GWGCWC	2 cut(s)	294, 545
Alw26I	GTCTC	2 cut(s)	140, 179
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	219, 383
ApeKI	GCWGC	4 cut(s)	5, 46, 158, 704
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AspS9I	GGNCC	4 cut(s)	219, 383, 437, 681
AsuHPI	GGTGA	3 cut(s)	51, 103, 253
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	437, 681
BaeGI	GKGCMC	2 cut(s)	105, 394
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	294, 545
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
BbsI	GAAGAC	2 cut(s)	192, 579
Bbv12I	GWGCWC	2 cut(s)	294, 545
BbvI	GCAGC	3 cut(s)	33, 145, 691
BccI	CCATC	3 cut(s)	239, 683, 756
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 766, 800
BciT130I	CCWGG	2 cut(s)	381, 387
BcoDI	GTCTC	2 cut(s)	140, 179
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	473
BisI	GCNGC	5 cut(s)	6, 9, 47, 159, 705
BlsI	GCNGC	5 cut(s)	7, 10, 48, 160, 706
Bme1390I	CCNGG	2 cut(s)	381, 387
Bme18I	GGWCC	2 cut(s)	437, 681
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmgT120I	GGNCC	4 cut(s)	219, 383, 437, 681
BmiI	GGNNCC	2 cut(s)	393, 439
BmrFI	CCNGG	2 cut(s)	381, 387
BpiI	GAAGAC	2 cut(s)	192, 579
Bpu14I	TTCGAA	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	140, 179
BsaJI	CCNNGG	4 cut(s)	379, 380, 386, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 386, 455, 777
Bse1I	ACTGG	2 cut(s)	277, 742
Bse3DI	GCAATG	2 cut(s)	325, 413
BseBI	CCWGG	2 cut(s)	381, 387
BseDI	CCNNGG	4 cut(s)	379, 380, 386, 684
BseGI	GGATG	4 cut(s)	302, 343, 694, 748
BseLI	CCNNNNNNNGG	4 cut(s)	283, 386, 455, 777
BseMI	GCAATG	2 cut(s)	325, 413
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	2 cut(s)	277, 742
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	2 cut(s)	105, 394
BseXI	GCAGC	3 cut(s)	33, 145, 691
BshFI	GGCC	2 cut(s)	221, 385
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	2 cut(s)	294, 545
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	4 cut(s)	283, 386, 455, 777
BsmAI	GTCTC	2 cut(s)	140, 179
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	221, 385
Bso31I	GGTCTC	2 cut(s)	140, 179
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	4 cut(s)	105, 294, 394, 545
Bsp143I	GATC	2 cut(s)	372, 807
BspACI	CCGC	2 cut(s)	9, 71
BspANI	GGCC	2 cut(s)	221, 385
BspCNI	CTCAG	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	393, 439
BspMAI	CTGCAG	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	533
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	2 cut(s)	140, 179
BsrDI	GCAATG	2 cut(s)	325, 413
BsrI	ACTGG	2 cut(s)	277, 742
BssECI	CCNNGG	4 cut(s)	379, 380, 386, 684
BssMI	GATC	2 cut(s)	372, 807
Bst2UI	CCWGG	2 cut(s)	381, 387
Bst4CI	ACNGT	4 cut(s)	334, 424, 626, 647
Bst6I	CTCTTC	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	1 cut(s)	831
BstF5I	GGATG	4 cut(s)	302, 343, 694, 748
BstKTI	GATC	2 cut(s)	375, 810
BstMAI	GTCTC	2 cut(s)	140, 179
BstMBI	GATC	2 cut(s)	372, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	381, 387
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	379, 385
BstSFI	CTRYAG	1 cut(s)	473
BstSLI	GKGCMC	2 cut(s)	105, 394
BstV1I	GCAGC	3 cut(s)	33, 145, 691
BstV2I	GAAGAC	2 cut(s)	192, 579
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	221, 385
BtsCI	GGATG	4 cut(s)	302, 343, 694, 748
BtsI	GCAGTG	3 cut(s)	18, 482, 606
BtsIMutI	CAGTG	4 cut(s)	18, 339, 482, 606
Cac8I	GCNNGC	1 cut(s)	613
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	4 cut(s)	219, 383, 437, 681
CviAII	CATG	3 cut(s)	23, 533, 678
DdeI	CTNAG	1 cut(s)	831
DpnI	GATC	2 cut(s)	374, 809
DpnII	GATC	2 cut(s)	372, 807
DriI	GACNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	533
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	533
Ecl136II	GAGCTC	2 cut(s)	292, 543
Eco24I	GRGCYC	2 cut(s)	294, 545
Eco31I	GGTCTC	2 cut(s)	140, 179
Eco32I	GATATC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	437, 681
Eco53kI	GAGCTC	2 cut(s)	292, 543
Eco57I	CTGAAG	2 cut(s)	186, 716
EcoICRI	GAGCTC	2 cut(s)	292, 543
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	379, 385
EcoRV	GATATC	1 cut(s)	620
EcoT38I	GRGCYC	2 cut(s)	294, 545
FaeI	CATG	3 cut(s)	26, 536, 681
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	3 cut(s)	22, 532, 677
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	6, 9, 47, 159, 705
FokI	GGATG	4 cut(s)	309, 350, 701, 735
FriOI	GRGCYC	2 cut(s)	294, 545
Fsp4HI	GCNGC	5 cut(s)	6, 9, 47, 159, 705
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	5 cut(s)	6, 9, 47, 159, 705
HaeIII	GGCC	2 cut(s)	221, 385
Hin1II	CATG	3 cut(s)	26, 536, 681
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	4 cut(s)	366, 401, 821, 827
HphI	GGTGA	3 cut(s)	51, 103, 253
Hpy188I	TCNGA	6 cut(s)	33, 211, 296, 772, 826, 832
Hpy188III	TCNNGA	4 cut(s)	370, 405, 752, 811
HpyAV	CCTTC	2 cut(s)	559, 767
HpyCH4III	ACNGT	4 cut(s)	334, 424, 626, 647
HpyCH4V	TGCA	5 cut(s)	161, 418, 475, 480, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	831
Hsp92II	CATG	3 cut(s)	26, 536, 681
Kzo9I	GATC	2 cut(s)	372, 807
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	3 cut(s)	33, 145, 691
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	13, 299, 710
MalI	GATC	2 cut(s)	374, 809
MboI	GATC	2 cut(s)	372, 807
MboII	GAAGA	5 cut(s)	192, 550, 584, 671, 722
MhlI	GDGCHC	4 cut(s)	105, 294, 394, 545
MluCI	AATT	7 cut(s)	140, 190, 247, 326, 633, 669, 835
MlyI	GAGTC	2 cut(s)	375, 830
MmeI	TCCRAC	2 cut(s)	408, 804
MnlI	CCTC	9 cut(s)	37, 90, 115, 210, 356, 481, 491, 562, 679
MseI	TTAA	2 cut(s)	92, 329
MspR9I	CCNGG	2 cut(s)	381, 387
MvaI	CCWGG	2 cut(s)	381, 387
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	2 cut(s)	372, 807
NlaIII	CATG	3 cut(s)	26, 536, 681
NlaIV	GGNNCC	2 cut(s)	393, 439
NmuCI	GTSAC	3 cut(s)	13, 299, 710
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	401, 827
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	5 cut(s)	7, 10, 48, 160, 706
PleI	GAGTC	2 cut(s)	374, 829
PpsI	GAGTC	2 cut(s)	374, 829
PpuMI	RGGWCCY	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	558
Psp124BI	GAGCTC	2 cut(s)	294, 545
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	379, 385
PspGI	CCWGG	2 cut(s)	379, 385
PspN4I	GGNNCC	2 cut(s)	393, 439
PspPI	GGNCC	4 cut(s)	219, 383, 437, 681
PspPPI	RGGWCCY	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	209
SacI	GAGCTC	2 cut(s)	294, 545
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	92, 329
SatI	GCNGC	5 cut(s)	6, 9, 47, 159, 705
Sau3AI	GATC	2 cut(s)	372, 807
Sau96I	GGNCC	4 cut(s)	219, 383, 437, 681
SchI	GAGTC	2 cut(s)	375, 830
ScrFI	CCNGG	2 cut(s)	381, 387
SduI	GDGCHC	4 cut(s)	105, 294, 394, 545
SetI	ASST	8 cut(s)	48, 169, 260, 266, 294, 545, 581, 728
SfcI	CTRYAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	2 cut(s)	437, 681
Sse9I	AATT	7 cut(s)	140, 190, 247, 326, 633, 669, 835
SsiI	CCGC	2 cut(s)	9, 71
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	2 cut(s)	294, 545
StyD4I	CCNGG	2 cut(s)	379, 385
TaaI	ACNGT	4 cut(s)	334, 424, 626, 647
TaqI	TCGA	2 cut(s)	194, 810
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	7 cut(s)	140, 190, 247, 326, 633, 669, 835
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	401, 827
Tru1I	TTAA	2 cut(s)	92, 329
Tru9I	TTAA	2 cut(s)	92, 329
TscAI	CASTG	4 cut(s)	18, 339, 482, 613
TseFI	GTSAC	3 cut(s)	13, 299, 710
TseI	GCWGC	4 cut(s)	5, 46, 158, 704
Tsp45I	GTSAC	3 cut(s)	13, 299, 710
TspDTI	ATGAA	2 cut(s)	339, 354
TspRI	CASTG	4 cut(s)	18, 339, 482, 613
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	437, 681
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.