Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

31414372 .. 31417239

Gene Structure 2868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTTCCTTGTCAGCTCACCTTTCTTCAAAACAATCCCACCTGCTCCTTTTGTCACCGAAACCCCTTCAAAACCCTCGTCCCACACTGATCTCTCTGCCCTCCTCAAACCCAAAAATCCAAACCGGCATCAAACTGCATGATGGGTTCAAGGTGAATGGCTCATTGCATGTCAATGAAGCCATTGTGAAGACTTCAGTTTCTGAGAAGAGGGCCAACAGTCCCATTATTGTCATCGATAACTATGACAGCTTCACCTACAATCTCTGTCAGTATATGGGAGAGCTCGGATGTCTGTTTGAAGTTTATCGCAATGATGAACTAACAGTGGAAGAACTGAAAAAGAAAAATCCTAGAGGAGTTTTGATTTCCCCAGGACCAGGCACACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTGGGACCCATTGTCCCTTTATTTGGTGTGTGTATGGGTCTGCAGTGCATTGGGGAGGCTTTTGGAGGGAAGATCGTTCGTTCTCCTTATGGTGTCGTGCATGGGAAGAGCTCTCCAGTTTATTATAATGAGAAAGAGAAAGACAGCTTATTTGCTGGACTATCAAATCCTTTCACTGCTGGTAGATATCACAGCCTTGTGATAGAAAAGGATAGTTTTCCTAGTGATGAACTGGAGATTACAGCATGGACAGAGGATGGACTAATAATGGCTGCTCGTCATAAAAAGTATAAGTACCTTCAGGGGGTTCAGTTCCATCCTGAGAGTATCATAACTTCAGAAGGCAGGACCATTGTTGGGAACTTTGTAAAATTGATTGAGAAGAGTGAATCAGAATCTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

278

Amino Acids

30.45

Weight (kDa)

6.46

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	78 - 265	1.1e-52	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	147 - 250	1.6e-11	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AarI	CACCTGC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	51
AcuI	CTGAAG	3 cut(s)	180, 710, 747
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	4 cut(s)	380, 449, 730, 783
AgsI	TTSAA	4 cut(s)	30, 71, 151, 302
AhdI	GACNNNNNGTC	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	373, 379
AluBI	AGCT	5 cut(s)	17, 252, 286, 537, 573
AluI	AGCT	5 cut(s)	17, 252, 286, 537, 573
Alw21I	GWGCWC	2 cut(s)	288, 539
AlwNI	CAGNNNCTG	2 cut(s)	203, 824
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	698
ArsI	GACNNNNNNTTYG	4 cut(s)	64, 96, 560, 592
AspS9I	GGNCC	4 cut(s)	213, 377, 431, 774
AsuHPI	GGTGA	4 cut(s)	11, 48, 166, 247
AvaII	GGWCC	3 cut(s)	377, 431, 774
BanII	GRGCYC	2 cut(s)	288, 539
BarI	GAAGNNNNNNTAC	2 cut(s)	745, 777
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	288, 539
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	3 cut(s)	137, 677, 750
BciT130I	CCWGG	2 cut(s)	375, 381
BfaI	CTAG	2 cut(s)	354, 648
BfmI	CTRYAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
Bme1390I	CCNGG	2 cut(s)	375, 381
Bme18I	GGWCC	3 cut(s)	377, 431, 774
BmeRI	GACNNNNNGTC	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	213, 377, 431, 774
BmiI	GGNNCC	2 cut(s)	432, 433
BmrFI	CCNGG	2 cut(s)	375, 381
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	2 cut(s)	525, 680
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 449, 730, 783
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	542, 663
Bse3DI	GCAATG	3 cut(s)	164, 319, 407
BseBI	CCWGG	2 cut(s)	375, 381
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	3 cut(s)	296, 688, 742
BseLI	CCNNNNNNNGG	4 cut(s)	380, 449, 730, 783
BseMI	GCAATG	3 cut(s)	164, 319, 407
BseMII	CTCAG	2 cut(s)	195, 738
BseNI	ACTGG	2 cut(s)	542, 663
BseRI	GAGGAG	2 cut(s)	94, 372
BseXI	GCAGC	1 cut(s)	685
BshFI	GGCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	237
BsiHKAI	GWGCWC	2 cut(s)	288, 539
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	4 cut(s)	66, 207, 425, 444
BslI	CCNNNNNNNGG	4 cut(s)	380, 449, 730, 783
BsmFI	GGGAC	4 cut(s)	66, 207, 425, 444
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	288, 539
Bsp143I	GATC	2 cut(s)	90, 498
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	2 cut(s)	196, 739
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	432, 433
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	527
BsrDI	GCAATG	3 cut(s)	164, 319, 407
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	542, 663
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	90, 498
Bst2UI	CCWGG	2 cut(s)	375, 381
Bst4CI	ACNGT	3 cut(s)	221, 328, 418
Bst6I	CTCTTC	3 cut(s)	203, 527, 803
BstDEI	CTNAG	2 cut(s)	204, 747
BstF5I	GGATG	3 cut(s)	296, 688, 742
BstKTI	GATC	2 cut(s)	93, 501
BstMBI	GATC	2 cut(s)	90, 498
BstNI	CCWGG	2 cut(s)	375, 381
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	373, 379
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	296, 688, 742
BtsI	GCAGTG	2 cut(s)	476, 600
BtsIMutI	CAGTG	4 cut(s)	86, 333, 476, 600
BveI	ACCTGC	1 cut(s)	51
CaiI	CAGNNNCTG	2 cut(s)	203, 824
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	4 cut(s)	213, 377, 431, 774
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	4 cut(s)	140, 170, 527, 672
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	2 cut(s)	204, 747
DpnI	GATC	2 cut(s)	92, 500
DpnII	GATC	2 cut(s)	90, 498
DriI	GACNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	3 cut(s)	203, 527, 803
Eam1105I	GACNNNNNGTC	1 cut(s)	437
EarI	CTCTTC	3 cut(s)	203, 527, 803
Ecl136II	GAGCTC	2 cut(s)	286, 537
Eco24I	GRGCYC	2 cut(s)	288, 539
Eco32I	GATATC	1 cut(s)	614
Eco47I	GGWCC	3 cut(s)	377, 431, 774
Eco53kI	GAGCTC	2 cut(s)	286, 537
Eco57I	CTGAAG	3 cut(s)	180, 710, 747
EcoICRI	GAGCTC	2 cut(s)	286, 537
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	373, 379
EcoRV	GATATC	1 cut(s)	614
EcoT38I	GRGCYC	2 cut(s)	288, 539
FaeI	CATG	4 cut(s)	143, 173, 530, 675
FaqI	GGGAC	4 cut(s)	66, 207, 425, 444
FatI	CATG	4 cut(s)	139, 169, 526, 671
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	3 cut(s)	303, 695, 729
FriOI	GRGCYC	2 cut(s)	288, 539
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	2 cut(s)	354, 648
GluI	GCNGC	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	525, 680
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	4 cut(s)	143, 173, 530, 675
HinfI	GANTC	3 cut(s)	395, 815, 821
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	4 cut(s)	11, 48, 166, 247
Hpy188I	TCNGA	5 cut(s)	205, 290, 766, 820, 826
Hpy188III	TCNNGA	2 cut(s)	399, 746
HpyAV	CCTTC	3 cut(s)	77, 734, 761
HpyCH4III	ACNGT	3 cut(s)	221, 328, 418
HpyCH4V	TGCA	6 cut(s)	139, 169, 412, 469, 474, 526
HpyF3I	CTNAG	2 cut(s)	204, 747
Hsp92II	CATG	4 cut(s)	143, 173, 530, 675
KflI	GGGWCCC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	90, 498
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	354, 648
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	2 cut(s)	92, 500
MboI	GATC	2 cut(s)	90, 498
MboII	GAAGA	7 cut(s)	18, 202, 220, 344, 508, 544, 820
MhlI	GDGCHC	2 cut(s)	288, 539
MluCI	AATT	2 cut(s)	797, 829
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	87, 112, 115, 204, 350, 475, 485, 673
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	375, 381
MvaI	CCWGG	2 cut(s)	375, 381
NdeII	GATC	2 cut(s)	90, 498
NlaIII	CATG	4 cut(s)	143, 173, 530, 675
NlaIV	GGNNCC	2 cut(s)	432, 433
NmuCI	GTSAC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	395, 815, 821
PkrI	GCNGC	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	552
Psp124BI	GAGCTC	2 cut(s)	288, 539
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	373, 379
PspGI	CCWGG	2 cut(s)	373, 379
PspN4I	GGNNCC	2 cut(s)	432, 433
PspPI	GGNCC	4 cut(s)	213, 377, 431, 774
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	2 cut(s)	203, 824
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	2 cut(s)	288, 539
SapI	GCTCTTC	1 cut(s)	527
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	2 cut(s)	90, 498
Sau96I	GGNCC	4 cut(s)	213, 377, 431, 774
ScrFI	CCNGG	2 cut(s)	375, 381
SduI	GDGCHC	2 cut(s)	288, 539
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	467
SinI	GGWCC	3 cut(s)	377, 431, 774
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	797, 829
SspMI	CTAG	2 cut(s)	354, 648
SstI	GAGCTC	2 cut(s)	288, 539
StyD4I	CCNGG	2 cut(s)	373, 379
TaaI	ACNGT	3 cut(s)	221, 328, 418
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	797, 829
TfiI	GAWTC	3 cut(s)	395, 815, 821
TscAI	CASTG	4 cut(s)	93, 333, 476, 607
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	192, 333, 669
TspRI	CASTG	4 cut(s)	93, 333, 476, 607
VpaK11BI	GGWCC	3 cut(s)	377, 431, 774
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	2 cut(s)	354, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.