Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

38843742 .. 38847156

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGTTCCATCCTGAAAGTATCATCACTTCCGAAGGCGGGACAATCGTTCGCAACTTTGTAAAACTGATCGAGAAAAGTGAGTCGGAATCGAGAATAACTAGAGGTTTGGTTTGTCTACACAAGTGTAATGTAATGTATCGGATCAATATATATTTATGGGCCTTTAAGTCAGCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

59

Amino Acids

6.87

Weight (kDa)

9.51

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	159
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BccI	CCATC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	99, 178
BmgT120I	GGNCC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	66, 141
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	149
BssMI	GATC	2 cut(s)	66, 141
BstC8I	GCNNGC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	2 cut(s)	69, 144
BstMBI	GATC	2 cut(s)	66, 141
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	159
CviJI	RGCY	2 cut(s)	161, 173
CviKI_1	RGCY	2 cut(s)	161, 173
DpnI	GATC	2 cut(s)	68, 143
DpnII	GATC	2 cut(s)	66, 141
FaiI	YATR	3 cut(s)	149, 151, 157
FaqI	GGGAC	1 cut(s)	52
FauI	CCCGC	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	115
FspBI	CTAG	2 cut(s)	99, 178
HaeIII	GGCC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	80, 86
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	31, 85, 141
Hpy188III	TCNNGA	3 cut(s)	11, 70, 90
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	66, 141
LpnPI	CCDG	1 cut(s)	24
MaeI	CTAG	2 cut(s)	99, 178
MalI	GATC	2 cut(s)	68, 143
MboI	GATC	2 cut(s)	66, 141
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	165
NdeII	GATC	2 cut(s)	66, 141
PfeI	GAWTC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	66, 141
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	89
SetI	ASST	2 cut(s)	106, 175
SgeI	CNNG	6 cut(s)	23, 49, 82, 102, 111, 133
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	99, 178
TaqI	TCGA	2 cut(s)	69, 89
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	2 cut(s)	99, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.