Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

23447340 .. 23449679

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTTCACCACTCGCCGCCTAAACCAGTCTCTCGTTAACTCTCTTACGAACCCAACAAGAGTTTCGGTTTTGTGGAAGAGTCGTAGAGATGTTATTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCGATATCTTCCGTTGTTGTCAATTCCTCTGGTCCTATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGGTGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCTGAAAAGAAAAAAGCCAAGAGGATTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACCCTTTCCTTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATTCATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGAAAGTACAAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGACAATTGTTCGCAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

273

Amino Acids

30.32

Weight (kDa)

7.05

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	74 - 261	2.6e-54	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	143 - 246	5.7e-11	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	279, 371
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	733
AciI	CCGC	5 cut(s)	5, 64, 167, 298, 493
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	3 cut(s)	20, 373, 704
AfiI	CCNNNNNNNGG	4 cut(s)	47, 265, 368, 437
AgsI	TTSAA	4 cut(s)	38, 161, 290, 725
AjnI	CCWGG	2 cut(s)	361, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AloI	GAACNNNNNNTCC	2 cut(s)	411, 443
AluBI	AGCT	6 cut(s)	152, 240, 274, 325, 525, 814
AluI	AGCT	6 cut(s)	152, 240, 274, 325, 525, 814
Alw26I	GTCTC	2 cut(s)	81, 614
Ama87I	CYCGRG	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	733
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	1 cut(s)	175
Asp718I	GGTACC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	209, 365, 419
AsuHPI	GGTGA	2 cut(s)	46, 489
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	3 cut(s)	209, 365, 419
BanI	GGYRCC	2 cut(s)	279, 371
BauI	CACGAG	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	1 cut(s)	665
BciT130I	CCWGG	2 cut(s)	363, 369
BcoDI	GTCTC	2 cut(s)	81, 614
BfaI	CTAG	2 cut(s)	275, 636
BisI	GCNGC	3 cut(s)	6, 64, 687
BlsI	GCNGC	3 cut(s)	7, 65, 688
Bme1390I	CCNGG	2 cut(s)	363, 369
Bme18I	GGWCC	3 cut(s)	209, 365, 419
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	3 cut(s)	209, 365, 419
BmiI	GGNNCC	2 cut(s)	281, 373
BmrFI	CCNGG	2 cut(s)	363, 369
BpiI	GAAGAC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 265, 368, 437
Bse1I	ACTGG	2 cut(s)	73, 259
Bse3DI	GCAATG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	363, 369
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	4 cut(s)	47, 265, 368, 437
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	2 cut(s)	73, 259
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	673
BshNI	GGYRCC	2 cut(s)	279, 371
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	734
BslI	CCNNNNNNNGG	4 cut(s)	47, 265, 368, 437
BsmAI	GTCTC	2 cut(s)	81, 614
BsoBI	CYCGRG	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	615
BspACI	CCGC	5 cut(s)	5, 64, 167, 298, 493
BspCNI	CTCAG	1 cut(s)	799
BspEI	TCCGGA	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	281, 373
BspT107I	GGYRCC	2 cut(s)	279, 371
BsrDI	GCAATG	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	73, 259
BssMI	GATC	1 cut(s)	615
BssSI	CACGAG	1 cut(s)	611
Bst2BI	CACGAG	1 cut(s)	611
Bst2UI	CCWGG	2 cut(s)	363, 369
Bst4CI	ACNGT	3 cut(s)	316, 406, 608
Bst6I	CTCTTC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	1 cut(s)	807
BstEII	GGTNACC	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	730
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	2 cut(s)	81, 614
BstMBI	GATC	1 cut(s)	615
BstNI	CCWGG	2 cut(s)	363, 369
BstPI	GGTNACC	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	361, 367
BstV1I	GCAGC	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	816
Cfr13I	GGNCC	3 cut(s)	209, 365, 419
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	19, 372, 703
CviAII	CATG	2 cut(s)	515, 660
CviQI	GTAC	3 cut(s)	19, 372, 703
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	182
Eco32I	GATATC	2 cut(s)	183, 602
Eco47I	GGWCC	3 cut(s)	209, 365, 419
Eco88I	CYCGRG	1 cut(s)	647
Eco91I	GGTNACC	1 cut(s)	495
EcoO65I	GGTNACC	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	361, 367
EcoRV	GATATC	2 cut(s)	183, 602
EcoT22I	ATGCAT	1 cut(s)	516
FaeI	CATG	2 cut(s)	518, 663
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	2 cut(s)	514, 659
Fnu4HI	GCNGC	3 cut(s)	6, 64, 687
FokI	GGATG	1 cut(s)	717
Fsp4HI	GCNGC	3 cut(s)	6, 64, 687
FspBI	CTAG	2 cut(s)	275, 636
GluI	GCNGC	3 cut(s)	6, 64, 687
HapII	CCGG	1 cut(s)	734
Hin1II	CATG	2 cut(s)	518, 663
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	5 cut(s)	127, 170, 383, 626, 803
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	734
HphI	GGTGA	2 cut(s)	46, 489
Hpy166II	GTNNAC	3 cut(s)	85, 295, 535
Hpy188I	TCNGA	2 cut(s)	419, 808
Hpy188III	TCNNGA	5 cut(s)	220, 380, 570, 613, 734
Hpy8I	GTNNAC	3 cut(s)	85, 295, 535
HpyAV	CCTTC	2 cut(s)	551, 749
HpyCH4III	ACNGT	3 cut(s)	316, 406, 608
HpyCH4V	TGCA	3 cut(s)	400, 457, 514
HpyF3I	CTNAG	1 cut(s)	807
Hsp92II	CATG	2 cut(s)	518, 663
Kpn2I	TCCGGA	1 cut(s)	733
KpnI	GGTACC	1 cut(s)	375
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	673
MabI	ACCWGGT	1 cut(s)	367
MaeI	CTAG	2 cut(s)	275, 636
MaeIII	GTNAC	3 cut(s)	495, 652, 692
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	6 cut(s)	23, 26, 136, 177, 566, 680
MfeI	CAATTG	1 cut(s)	765
MluCI	AATT	7 cut(s)	22, 175, 199, 229, 725, 765, 775
MlyI	GAGTC	2 cut(s)	136, 377
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	6 cut(s)	214, 313, 338, 387, 473, 643
Mph1103I	ATGCAT	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	733
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	1 cut(s)	734
MspR9I	CCNGG	2 cut(s)	363, 369
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	363, 369
NdeII	GATC	1 cut(s)	615
NlaIII	CATG	2 cut(s)	518, 663
NlaIV	GGNNCC	2 cut(s)	281, 373
NmuCI	GTSAC	2 cut(s)	495, 692
NsiI	ATGCAT	1 cut(s)	516
PaeR7I	CTCGAG	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	170, 626, 803
PflMI	CCANNNNNTGG	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	7, 65, 688
PleI	GAGTC	2 cut(s)	135, 377
PpsI	GAGTC	2 cut(s)	135, 377
PsiI	TTATAA	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	361, 367
PspEI	GGTNACC	1 cut(s)	495
PspGI	CCWGG	2 cut(s)	361, 367
PspN4I	GGNNCC	2 cut(s)	281, 373
PspPI	GGNCC	3 cut(s)	209, 365, 419
PspXI	VCTCGAGB	1 cut(s)	647
RsaI	GTAC	3 cut(s)	20, 373, 704
RsaNI	GTAC	3 cut(s)	19, 372, 703
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	6, 64, 687
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	3 cut(s)	209, 365, 419
SchI	GAGTC	2 cut(s)	136, 377
ScrFI	CCNGG	2 cut(s)	363, 369
SetI	ASST	9 cut(s)	154, 242, 276, 327, 370, 527, 598, 654, 816
SexAI	ACCWGGT	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	647
SinI	GGWCC	3 cut(s)	209, 365, 419
SlaI	CTCGAG	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	378, 647
SmoI	CTYRAG	2 cut(s)	378, 647
Sse9I	AATT	7 cut(s)	22, 175, 199, 229, 725, 765, 775
SsiI	CCGC	5 cut(s)	5, 64, 167, 298, 493
SspMI	CTAG	2 cut(s)	275, 636
StyD4I	CCNGG	2 cut(s)	361, 367
TaaI	ACNGT	3 cut(s)	316, 406, 608
TaqI	TCGA	5 cut(s)	155, 173, 179, 618, 648
TasI	AATT	7 cut(s)	22, 175, 199, 229, 725, 765, 775
TatI	WGTACW	2 cut(s)	18, 702
TauI	GCSGC	2 cut(s)	8, 66
TfiI	GAWTC	3 cut(s)	170, 626, 803
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	2 cut(s)	495, 692
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	2 cut(s)	495, 692
TspDTI	ATGAA	5 cut(s)	321, 618, 657, 719, 769
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	464
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	3 cut(s)	209, 365, 419
XapI	RAATTY	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	647
XspI	CTAG	2 cut(s)	275, 636
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.