Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

4500041 .. 4501686

Gene Structure 1646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG023200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGTACATGGGAGAGCTTGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACAGTGGATGAACTAAAAAGGAAAAATCCTAGAGGAGTCTTGATCTCCCCAGGGCCAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGTGTGTGTATGGGTCTGCAGTGCATTGGGGAGGCTTTTGGAGGGAATGTTGTTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGTATCTTCAGGGTGTCCAGTTCCATCCTGAAAGTATCATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAAAACTGATCGAGAAAAGTGAGTCGGAATCTGAGAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

189

Amino Acids

21.01

Weight (kDa)

5.29

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	2 - 176	6.4e-46	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	58 - 161	8.3e-12	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	113, 182, 504
AgsI	TTSAA	3 cut(s)	35, 365, 395
AhdI	GACNNNNNGTC	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	106, 112
AluBI	AGCT	3 cut(s)	19, 270, 306
AluI	AGCT	3 cut(s)	19, 270, 306
Alw21I	GWGCWC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	3 cut(s)	110, 164, 408
AvaII	GGWCC	2 cut(s)	164, 408
BaeGI	GKGCMC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	478, 510
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	410, 483
BcgI	CGANNNNNNTGC	2 cut(s)	493, 527
BciT130I	CCWGG	2 cut(s)	108, 114
BfaI	CTAG	3 cut(s)	87, 381, 568
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	2 cut(s)	108, 114
Bme18I	GGWCC	2 cut(s)	164, 408
BmeRI	GACNNNNNGTC	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	110, 164, 408
BmiI	GGNNCC	2 cut(s)	120, 166
BmrFI	CCNGG	2 cut(s)	108, 114
BpiI	GAAGAC	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	106, 107, 113, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 182, 504
Bse1I	ACTGG	1 cut(s)	469
Bse3DI	GCAATG	2 cut(s)	52, 140
BseBI	CCWGG	2 cut(s)	108, 114
BseDI	CCNNGG	4 cut(s)	106, 107, 113, 411
BseGI	GGATG	4 cut(s)	29, 70, 421, 475
BseLI	CCNNNNNNNGG	3 cut(s)	113, 182, 504
BseMI	GCAATG	2 cut(s)	52, 140
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	113, 182, 504
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	121, 272
Bsp143I	GATC	2 cut(s)	99, 534
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	120, 166
BspMAI	CTGCAG	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	52, 140
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	4 cut(s)	106, 107, 113, 411
BssMI	GATC	2 cut(s)	99, 534
Bst2UI	CCWGG	2 cut(s)	108, 114
Bst4CI	ACNGT	4 cut(s)	61, 151, 353, 374
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	4 cut(s)	29, 70, 421, 475
BstKTI	GATC	2 cut(s)	102, 537
BstMBI	GATC	2 cut(s)	99, 534
BstNI	CCWGG	2 cut(s)	108, 114
BstSCI	CCNGG	2 cut(s)	106, 112
BstSFI	CTRYAG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	29, 70, 421, 475
BtsI	GCAGTG	2 cut(s)	209, 333
BtsIMutI	CAGTG	3 cut(s)	66, 209, 333
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	110, 164, 408
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	10, 260, 405
CviJI	RGCY	6 cut(s)	19, 112, 218, 270, 306, 431
CviKI_1	RGCY	6 cut(s)	19, 112, 218, 270, 306, 431
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	2 cut(s)	101, 536
DpnII	GATC	2 cut(s)	99, 534
DriI	GACNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	164, 408
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	106, 112
EcoRV	GATATC	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	3 cut(s)	13, 263, 408
FaiI	YATR	7 cut(s)	11, 194, 249, 261, 285, 406, 450
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	3 cut(s)	9, 259, 404
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	4 cut(s)	36, 77, 428, 462
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	3 cut(s)	87, 381, 568
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	13, 263, 408
HinfI	GANTC	4 cut(s)	93, 128, 548, 554
Hpy188I	TCNGA	3 cut(s)	499, 553, 559
Hpy188III	TCNNGA	4 cut(s)	97, 132, 479, 538
HpyAV	CCTTC	2 cut(s)	286, 494
HpyCH4III	ACNGT	4 cut(s)	61, 151, 353, 374
HpyCH4V	TGCA	4 cut(s)	145, 202, 207, 259
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	13, 263, 408
Kzo9I	GATC	2 cut(s)	99, 534
LguI	GCTCTTC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	87, 381, 568
MaeIII	GTNAC	2 cut(s)	26, 437
MalI	GATC	2 cut(s)	101, 536
MboI	GATC	2 cut(s)	99, 534
MboII	GAAGA	4 cut(s)	277, 311, 398, 449
MhlI	GDGCHC	2 cut(s)	121, 272
MluCI	AATT	3 cut(s)	53, 360, 396
MlyI	GAGTC	2 cut(s)	102, 557
MmeI	TCCRAC	2 cut(s)	135, 531
MnlI	CCTC	5 cut(s)	83, 208, 218, 289, 406
MseI	TTAA	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	108, 114
MvaI	CCWGG	2 cut(s)	108, 114
NdeII	GATC	2 cut(s)	99, 534
NlaIII	CATG	3 cut(s)	13, 263, 408
NlaIV	GGNNCC	2 cut(s)	120, 166
NmuCI	GTSAC	2 cut(s)	26, 437
PasI	CCCWGGG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	128, 554
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	2 cut(s)	101, 556
PpsI	GAGTC	2 cut(s)	101, 556
PpuMI	RGGWCCY	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	106, 112
PspGI	CCWGG	2 cut(s)	106, 112
PspN4I	GGNNCC	2 cut(s)	120, 166
PspPI	GGNCC	3 cut(s)	110, 164, 408
PspPPI	RGGWCCY	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	99, 534
Sau96I	GGNCC	3 cut(s)	110, 164, 408
SchI	GAGTC	2 cut(s)	102, 557
ScrFI	CCNGG	2 cut(s)	108, 114
SduI	GDGCHC	2 cut(s)	121, 272
SetI	ASST	4 cut(s)	21, 272, 308, 455
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	164, 408
Sse9I	AATT	3 cut(s)	53, 360, 396
SspMI	CTAG	3 cut(s)	87, 381, 568
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	106, 112
TaaI	ACNGT	4 cut(s)	61, 151, 353, 374
TaqI	TCGA	1 cut(s)	537
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	53, 360, 396
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	128, 554
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	3 cut(s)	66, 209, 340
TseFI	GTSAC	2 cut(s)	26, 437
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	2 cut(s)	26, 437
TspDTI	ATGAA	3 cut(s)	17, 66, 81
TspRI	CASTG	3 cut(s)	66, 209, 340
VpaK11BI	GGWCC	2 cut(s)	164, 408
XspI	CTAG	3 cut(s)	87, 381, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.