Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

3632679 .. 3634324

Gene Structure 1646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGTACATGGGAGAGCTTGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACAGTGGATGAACTAAAAAGGAAAAATCCTAGAGGAGTCTTGATCTCCCCAGGGCCAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGTGTGTGTATGGGTCTGCAGTGCATTGGGGAGGCTTTTGGAGGCAAGTCTTCTAGGACGGAATATTTGGGAATGTTGTTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAAGTGACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGTATCTTCAGGGTGTCCAGTTCCATCCTGAAAGTATTATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAAAACTGATCGAGAAAAGTGAGTCGGAATCTGAGAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

6.12

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	2 - 186	1.6e-38	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	58 - 171	5.9e-09	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	113, 182, 534
AgsI	TTSAA	3 cut(s)	35, 395, 425
AhdI	GACNNNNNGTC	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	106, 112
AluBI	AGCT	3 cut(s)	19, 296, 332
AluI	AGCT	3 cut(s)	19, 296, 332
Alw21I	GWGCWC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	461
ArsI	GACNNNNNNTTYG	4 cut(s)	232, 264, 319, 351
AspS9I	GGNCC	3 cut(s)	110, 164, 438
AvaII	GGWCC	2 cut(s)	164, 438
BaeGI	GKGCMC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
BbsI	GAAGAC	2 cut(s)	225, 332
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	440, 513
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BciT130I	CCWGG	2 cut(s)	108, 114
BfaI	CTAG	4 cut(s)	87, 237, 411, 598
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	108, 114
Bme18I	GGWCC	2 cut(s)	164, 438
BmeRI	GACNNNNNGTC	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	110, 164, 438
BmiI	GGNNCC	2 cut(s)	120, 166
BmrFI	CCNGG	2 cut(s)	108, 114
BpiI	GAAGAC	2 cut(s)	225, 332
BsaJI	CCNNGG	4 cut(s)	106, 107, 113, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 182, 534
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	2 cut(s)	52, 140
BseBI	CCWGG	2 cut(s)	108, 114
BseDI	CCNNGG	4 cut(s)	106, 107, 113, 441
BseGI	GGATG	4 cut(s)	29, 70, 451, 505
BseLI	CCNNNNNNNGG	3 cut(s)	113, 182, 534
BseMI	GCAATG	2 cut(s)	52, 140
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	113, 182, 534
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	121, 298
Bsp143I	GATC	2 cut(s)	99, 564
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	120, 166
BspMAI	CTGCAG	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	52, 140
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	4 cut(s)	106, 107, 113, 441
BssMI	GATC	2 cut(s)	99, 564
Bst2UI	CCWGG	2 cut(s)	108, 114
Bst4CI	ACNGT	4 cut(s)	61, 151, 383, 404
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	588
BstF5I	GGATG	4 cut(s)	29, 70, 451, 505
BstKTI	GATC	2 cut(s)	102, 567
BstMBI	GATC	2 cut(s)	99, 564
BstNI	CCWGG	2 cut(s)	108, 114
BstSCI	CCNGG	2 cut(s)	106, 112
BstSFI	CTRYAG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	2 cut(s)	225, 332
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	29, 70, 451, 505
BtsI	GCAGTG	2 cut(s)	209, 363
BtsIMutI	CAGTG	3 cut(s)	66, 209, 363
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	110, 164, 438
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	10, 286, 435
CviJI	RGCY	6 cut(s)	19, 112, 218, 296, 332, 461
CviKI_1	RGCY	6 cut(s)	19, 112, 218, 296, 332, 461
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	2 cut(s)	101, 566
DpnII	GATC	2 cut(s)	99, 564
DriI	GACNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	286
Eam1105I	GACNNNNNGTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	164, 438
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	106, 112
EcoRV	GATATC	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	3 cut(s)	13, 289, 438
FaiI	YATR	7 cut(s)	11, 194, 275, 287, 311, 436, 480
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	3 cut(s)	9, 285, 434
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	4 cut(s)	36, 77, 458, 492
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	4 cut(s)	87, 237, 411, 598
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	13, 289, 438
HinfI	GANTC	4 cut(s)	93, 128, 578, 584
Hpy188I	TCNGA	3 cut(s)	529, 583, 589
Hpy188III	TCNNGA	4 cut(s)	97, 132, 509, 568
HpyAV	CCTTC	2 cut(s)	312, 524
HpyCH4III	ACNGT	4 cut(s)	61, 151, 383, 404
HpyCH4V	TGCA	4 cut(s)	145, 202, 207, 285
HpyF3I	CTNAG	1 cut(s)	588
Hsp92II	CATG	3 cut(s)	13, 289, 438
Kzo9I	GATC	2 cut(s)	99, 564
LguI	GCTCTTC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	448
MaeI	CTAG	4 cut(s)	87, 237, 411, 598
MaeIII	GTNAC	3 cut(s)	26, 353, 467
MalI	GATC	2 cut(s)	101, 566
MboI	GATC	2 cut(s)	99, 564
MboII	GAAGA	5 cut(s)	225, 303, 337, 428, 479
MhlI	GDGCHC	2 cut(s)	121, 298
MluCI	AATT	3 cut(s)	53, 390, 426
MlyI	GAGTC	2 cut(s)	102, 587
MmeI	TCCRAC	2 cut(s)	135, 561
MnlI	CCTC	5 cut(s)	83, 208, 218, 315, 436
MseI	TTAA	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	108, 114
MvaI	CCWGG	2 cut(s)	108, 114
NdeII	GATC	2 cut(s)	99, 564
NlaIII	CATG	3 cut(s)	13, 289, 438
NlaIV	GGNNCC	2 cut(s)	120, 166
NmuCI	GTSAC	3 cut(s)	26, 353, 467
PasI	CCCWGGG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	128, 584
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	2 cut(s)	101, 586
PpsI	GAGTC	2 cut(s)	101, 586
PpuMI	RGGWCCY	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	106, 112
PspGI	CCWGG	2 cut(s)	106, 112
PspN4I	GGNNCC	2 cut(s)	120, 166
PspPI	GGNCC	3 cut(s)	110, 164, 438
PspPPI	RGGWCCY	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	99, 564
Sau96I	GGNCC	3 cut(s)	110, 164, 438
SchI	GAGTC	2 cut(s)	102, 587
ScrFI	CCNGG	2 cut(s)	108, 114
SduI	GDGCHC	2 cut(s)	121, 298
SetI	ASST	4 cut(s)	21, 298, 334, 485
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	164, 438
Sse9I	AATT	3 cut(s)	53, 390, 426
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	4 cut(s)	87, 237, 411, 598
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	106, 112
TaaI	ACNGT	4 cut(s)	61, 151, 383, 404
TaqI	TCGA	1 cut(s)	567
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	3 cut(s)	53, 390, 426
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	128, 584
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	3 cut(s)	66, 209, 370
TseFI	GTSAC	3 cut(s)	26, 353, 467
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	3 cut(s)	26, 353, 467
TspDTI	ATGAA	3 cut(s)	17, 66, 81
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	66, 209, 370
VpaK11BI	GGWCC	2 cut(s)	164, 438
XspI	CTAG	4 cut(s)	87, 237, 411, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.