Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

38864868 .. 38867900

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTGGACGATCGTGGATCGTTGGGCTGCTTTGAAGACGCAGCGGGATTAGAGTACATGGGAGAGCTTGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACAGTGGATGAACTAAAAAGGAAAAATCCTAGAGGAGTCTTGATCTCCCAGGGGGCCAGGTTAGGGGCACCCCAAGATTCTGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGGAATGTTGTTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACTGCTGGCAGAGATATCACAGTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

124

Amino Acids

13.46

Weight (kDa)

4.7

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	168, 236, 237
AgsI	TTSAA	2 cut(s)	35, 83
AhdI	GACNNNNNGTC	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	153, 161
AluBI	AGCT	3 cut(s)	67, 282, 318
AluI	AGCT	3 cut(s)	67, 282, 318
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	27, 41
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspS9I	GGNCC	2 cut(s)	159, 218
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	42, 318
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	14, 53
BciT130I	CCWGG	2 cut(s)	155, 163
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	28, 42
BlsI	GCNGC	2 cut(s)	29, 43
Bme1390I	CCNGG	2 cut(s)	155, 163
Bme18I	GGWCC	1 cut(s)	218
BmeRI	GACNNNNNGTC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	159, 218
BmiI	GGNNCC	3 cut(s)	160, 174, 220
BmrFI	CCNGG	2 cut(s)	155, 163
BpiI	GAAGAC	2 cut(s)	42, 318
BsaJI	CCNNGG	2 cut(s)	153, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 236, 237
Bse3DI	GCAATG	2 cut(s)	100, 194
BseBI	CCWGG	2 cut(s)	155, 163
BseDI	CCNNGG	2 cut(s)	153, 154
BseGI	GGATG	2 cut(s)	77, 118
BseLI	CCNNNNNNNGG	3 cut(s)	168, 236, 237
BseMI	GCAATG	2 cut(s)	100, 194
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	14, 53
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	168, 236, 237
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	175, 284
Bsp143I	GATC	3 cut(s)	10, 17, 147
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	3 cut(s)	160, 174, 220
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	100, 194
BssECI	CCNNGG	2 cut(s)	153, 154
BssMI	GATC	3 cut(s)	10, 17, 147
Bst2UI	CCWGG	2 cut(s)	155, 163
Bst4CI	ACNGT	3 cut(s)	109, 205, 367
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	77, 118
BstKTI	GATC	3 cut(s)	13, 20, 150
BstMBI	GATC	3 cut(s)	10, 17, 147
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	155, 163
BstSCI	CCNGG	2 cut(s)	153, 161
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	14, 53
BstV2I	GAAGAC	2 cut(s)	42, 318
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	77, 118
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	114, 345
Cac8I	GCNNGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	159, 218
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	58, 272
CviJI	RGCY	5 cut(s)	27, 67, 161, 282, 318
CviKI_1	RGCY	5 cut(s)	27, 67, 161, 282, 318
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	3 cut(s)	12, 19, 149
DpnII	GATC	3 cut(s)	10, 17, 147
DriI	GACNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	272
Eam1105I	GACNNNNNGTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	153, 161
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	2 cut(s)	61, 275
FaiI	YATR	4 cut(s)	59, 261, 273, 297
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	57, 271
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	28, 42
FokI	GGATG	2 cut(s)	84, 125
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	28, 42
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	2 cut(s)	28, 42
HaeIII	GGCC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	61, 275
HinfI	GANTC	2 cut(s)	141, 182
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	145, 186
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	109, 205, 367
HpyCH4V	TGCA	2 cut(s)	199, 271
Hsp92II	CATG	2 cut(s)	61, 275
Kzo9I	GATC	3 cut(s)	10, 17, 147
LguI	GCTCTTC	1 cut(s)	272
LpnPI	CCDG	7 cut(s)	140, 148, 167, 171, 175, 312, 336
Lsp1109I	GCAGC	2 cut(s)	14, 53
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	3 cut(s)	12, 19, 149
MboI	GATC	3 cut(s)	10, 17, 147
MboII	GAAGA	3 cut(s)	47, 289, 323
MhlI	GDGCHC	2 cut(s)	175, 284
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	2 cut(s)	131, 301
MseI	TTAA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	155, 163
MvaI	CCWGG	2 cut(s)	155, 163
NdeII	GATC	3 cut(s)	10, 17, 147
NlaIII	CATG	2 cut(s)	61, 275
NlaIV	GGNNCC	3 cut(s)	160, 174, 220
NmuCI	GTSAC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	29, 43
Ple19I	CGATCG	1 cut(s)	13
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	153, 161
PspGI	CCWGG	2 cut(s)	153, 161
PspN4I	GGNNCC	3 cut(s)	160, 174, 220
PspPI	GGNCC	2 cut(s)	159, 218
PspPPI	RGGWCCY	1 cut(s)	218
PvuI	CGATCG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	2 cut(s)	28, 42
Sau3AI	GATC	3 cut(s)	10, 17, 147
Sau96I	GGNCC	2 cut(s)	159, 218
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	155, 163
SduI	GDGCHC	2 cut(s)	175, 284
SetI	ASST	4 cut(s)	69, 167, 284, 320
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	153, 161
TaaI	ACNGT	3 cut(s)	109, 205, 367
TasI	AATT	1 cut(s)	101
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	2 cut(s)	114, 352
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	27, 41
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	114, 129
TspRI	CASTG	2 cut(s)	114, 352
VpaK11BI	GGWCC	1 cut(s)	218
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.