Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

38834955 .. 38841588

Gene Structure 6634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGTGAGAAAGGGAGCAGCTTTGGTTGTTTCGAGAGGCACGAGATGTCACTGCGGCAGCCATTGAAGCGAGTGTGGCGTCTCCAACTGAAATCTGGTCTCAAATTGGGAAATGGGTTCGCTGCAAAAGCTTCAATGGTTGTCAATGAGACCGATTCGAAGTCTTCGGTTTCTGAAAAGAGGGCCAACAACCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTCGCCGGTGCATTGGGGAGGCTTTTGGAGGCAAGTCTTCTAAGACGGAATATTTGGTTTATGAATTTGATCATTGATCTTTGTGGTGTTGCAGGGAATGTTGTTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAACCCTTTCACTGCTGGCAGATATCACAGTCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGTATCTTCAGCTCAATAGCAGTGAAATTCGAACATACACCCGTGCTGACTTGAATAACGGTGAAATTCTTCCCAATAAGCAAGCCCGGAAGAACACAAAGGAGACGGTATTCGGATTCGGATGCAATCGGACACGAGAAGAATTAAGTGAGAGAATTACCAGATTAAAGGAGACAATATTCCAGAAATTCGTAACCTCCAATTTCCATCTAAAGACCACAACTTTAAACAAAATCCAGAATATGCAAGCCCGAGAAGAACACAAAGGAGACGGTATTCAGATTCGGATGCAATCGGACACGAGAAGAATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

289

Amino Acids

32.98

Weight (kDa)

9.53

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	109 - 185	8.6e-10	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AciI	CCGC	1 cut(s)	55
AcsI	RAATTY	4 cut(s)	298, 579, 618, 740
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	67, 135, 467, 497, 607
AluBI	AGCT	6 cut(s)	21, 131, 222, 372, 408, 565
AluI	AGCT	6 cut(s)	21, 131, 222, 372, 408, 565
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	6 cut(s)	86, 104, 143, 650, 719, 816
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	4 cut(s)	18, 58, 122, 533
ApoI	RAATTY	4 cut(s)	298, 579, 618, 740
ArsI	GACNNNNNNTTYG	4 cut(s)	270, 302, 395, 427
Asp700I	GAANNNNTTC	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	183, 510
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	17, 217, 626
AsuII	TTCGAA	2 cut(s)	158, 583
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	374
BauI	CACGAG	3 cut(s)	41, 687, 853
BbsI	GAAGAC	3 cut(s)	156, 263, 408
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	30, 70, 109, 520
BccI	CCATC	3 cut(s)	203, 512, 768
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	640
BcoDI	GTCTC	6 cut(s)	86, 104, 143, 650, 719, 816
BfaI	CTAG	1 cut(s)	483
BisI	GCNGC	5 cut(s)	19, 56, 59, 123, 534
BlsI	GCNGC	5 cut(s)	20, 57, 60, 124, 535
Bme1390I	CCNGG	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	510
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	183, 510
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	665, 831
BpiI	GAAGAC	3 cut(s)	156, 263, 408
Bpu14I	TTCGAA	2 cut(s)	158, 583
BpuMI	CCSGG	1 cut(s)	640
BsaHI	GRCGYC	1 cut(s)	79
BsaI	GGTCTC	2 cut(s)	104, 143
BsaJI	CCNNGG	1 cut(s)	513
Bse118I	RCCGGY	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	3 cut(s)	523, 680, 846
BseXI	GCAGC	4 cut(s)	30, 70, 109, 520
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	2 cut(s)	240, 640
BsmAI	GTCTC	6 cut(s)	86, 104, 143, 650, 719, 816
BsmBI	CGTCTC	3 cut(s)	86, 650, 816
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	2 cut(s)	104, 143
BsoBI	CYCGRG	1 cut(s)	804
Bsp119I	TTCGAA	2 cut(s)	158, 583
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	303, 310
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	362
BspT104I	TTCGAA	2 cut(s)	158, 583
BspTNI	GGTCTC	2 cut(s)	104, 143
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	303, 310
BssNI	GRCGYC	1 cut(s)	79
BssSI	CACGAG	3 cut(s)	41, 687, 853
Bst2BI	CACGAG	3 cut(s)	41, 687, 853
Bst4CI	ACNGT	5 cut(s)	455, 476, 614, 661, 827
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	79
BstBI	TTCGAA	2 cut(s)	158, 583
BstC8I	GCNNGC	3 cut(s)	442, 636, 801
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	523, 680, 846
BstKTI	GATC	2 cut(s)	306, 313
BstMAI	GTCTC	6 cut(s)	86, 104, 143, 650, 719, 816
BstMBI	GATC	2 cut(s)	303, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 76, 128
BstSCI	CCNGG	1 cut(s)	638
BstV1I	GCAGC	4 cut(s)	30, 70, 109, 520
BstV2I	GAAGAC	3 cut(s)	156, 263, 408
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	523, 680, 846
BtsI	GCAGTG	3 cut(s)	50, 435, 580
BtsIMutI	CAGTG	3 cut(s)	50, 435, 580
Cac8I	GCNNGC	3 cut(s)	442, 636, 801
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	183, 510
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	362, 507
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	2 cut(s)	305, 312
DpnII	GATC	2 cut(s)	303, 310
DraI	TTTAAA	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	374
Eco31I	GGTCTC	2 cut(s)	104, 143
Eco32I	GATATC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	374
Esp3I	CGTCTC	3 cut(s)	86, 650, 816
FaeI	CATG	2 cut(s)	365, 510
FaiI	YATR	9 cut(s)	216, 296, 351, 363, 387, 508, 552, 589, 797
FatI	CATG	2 cut(s)	361, 506
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	19, 56, 59, 123, 534
FokI	GGATG	3 cut(s)	530, 687, 853
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	5 cut(s)	19, 56, 59, 123, 534
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	5 cut(s)	19, 56, 59, 123, 534
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	240, 640
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	365, 510
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	3 cut(s)	155, 669, 835
HpaII	CCGG	2 cut(s)	240, 640
HphI	GGTGA	3 cut(s)	17, 217, 626
Hpy188I	TCNGA	7 cut(s)	175, 668, 674, 684, 834, 840, 850
Hpy188III	TCNNGA	3 cut(s)	34, 736, 790
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	5 cut(s)	455, 476, 614, 661, 827
HpyCH4V	TGCA	7 cut(s)	125, 245, 326, 361, 678, 799, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 76, 128
HpyF3I	CTNAG	1 cut(s)	275
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	365, 510
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	303, 310
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	9 cut(s)	81, 253, 312, 402, 426, 653, 727, 749, 803
Lsp1109I	GCAGC	4 cut(s)	30, 70, 109, 520
LweI	GCATC	2 cut(s)	665, 831
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	3 cut(s)	48, 539, 745
MalI	GATC	2 cut(s)	305, 312
MboI	GATC	2 cut(s)	303, 310
MhlI	GDGCHC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	7 cut(s)	30, 174, 246, 256, 391, 508, 760
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	4 cut(s)	698, 719, 779, 864
MspI	CCGG	2 cut(s)	240, 640
MspR9I	CCNGG	1 cut(s)	640
MwoI	GCNNNNNNNGC	3 cut(s)	67, 76, 128
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	2 cut(s)	303, 310
NlaIII	CATG	2 cut(s)	365, 510
NmuCI	GTSAC	2 cut(s)	48, 539
NspV	TTCGAA	2 cut(s)	158, 583
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	3 cut(s)	155, 669, 835
PkrI	GCNGC	5 cut(s)	20, 57, 60, 124, 535
PsiI	TTATAA	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	183, 510
SacI	GAGCTC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	4 cut(s)	698, 719, 779, 864
SatI	GCNGC	5 cut(s)	19, 56, 59, 123, 534
Sau3AI	GATC	2 cut(s)	303, 310
Sau96I	GGNCC	2 cut(s)	183, 510
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	9 cut(s)	23, 133, 224, 230, 374, 410, 557, 567, 752
SfaNI	GCATC	2 cut(s)	665, 831
SfuI	TTCGAA	2 cut(s)	158, 583
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	510
SsiI	CCGC	1 cut(s)	55
SspI	AATATT	2 cut(s)	286, 732
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	638
TaaI	ACNGT	5 cut(s)	455, 476, 614, 661, 827
TaqI	TCGA	3 cut(s)	33, 158, 583
TaqII	GACCGA	2 cut(s)	167, 527
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	3 cut(s)	155, 669, 835
Tru1I	TTAA	4 cut(s)	698, 719, 779, 864
Tru9I	TTAA	4 cut(s)	698, 719, 779, 864
TscAI	CASTG	3 cut(s)	57, 442, 580
TseFI	GTSAC	2 cut(s)	48, 539
TseI	GCWGC	4 cut(s)	18, 58, 122, 533
Tsp45I	GTSAC	2 cut(s)	48, 539
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	3 cut(s)	57, 442, 580
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	4 cut(s)	298, 579, 618, 740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.