Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

31784902 .. 31788611

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G337100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTGCCTCAGTGACCTTTCAGGCCTCCCTCATACAACCAAAACCCACTCTCTCTTCCAAAACCCTGCAAAACCCTCGTCCTACTTTCATTTCTATTCCTTCTACTACCATCTCACAAGTGAGATTTGGTGTCAAATTGGGAAATGGGTTCGCCGCAAAAGCTTCAATGGCTGTCGCTGAAACATATTCGAAGCCTCCCGCTTCTGAAAAGAGGGTCAACAATCCCATCATTGTCATTGACAATTATGATAGCTTTACCTACAATCTTTGCCAGTATATGGGAGAGTCGGGATGTCTCTTTGAAGTCTATCGAAATGATGAACTAACTGTTGATGAACTAAAACGGAAAAATCCCAGAGGAGTGCTAATCTCTCCAGGGCCAGGCGCGCCCCAAGATTCTGGAATATCTTTGCAAACTGTATTGGAGCTGGGGCCCATTGTACCCTTATTTGGTGTTTGCATGGGTTTGCAGTGCATTGGGGAGGCTTTTGGAGGGAAGATTGTCCGTTCTCCTTTCGGTGTCATGCATGGGAAGAGCTCGCCCGTATATTATAACGAGAAAGGGGAAGATTTGTTTTCTGGATTATCGAACCCTTTTACTGCTGGCAGATATCACAGTCTTGTAATTGATAAGGACAGTTTTCCTAGTGAAGAACTTGAGGTTACAGCATGGACAGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGCATCTTCAAGGGGTTCAGTTCCATCCTGAAAGTATCATAACTTCTGAAGGCAAGACAATTGTGCGTAACTTTATCAAATTGATAGAGAAAAGAGAGTCTGAATCAGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

278

Amino Acids

30.44

Weight (kDa)

6.97

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccII	CGCG	1 cut(s)	389
AciI	CCGC	2 cut(s)	156, 201
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	280, 383, 452
AgsI	TTSAA	3 cut(s)	168, 305, 728
AjnI	CCWGG	2 cut(s)	376, 382
AluBI	AGCT	4 cut(s)	164, 255, 430, 540
AluI	AGCT	4 cut(s)	164, 255, 430, 540
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	3 cut(s)	24, 380, 434
ApaI	GGGCCC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	5, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AscI	GGCGCGCC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	389, 391
AspS9I	GGNCC	3 cut(s)	380, 434, 435
AsuII	TTCGAA	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	438
BanII	GRGCYC	2 cut(s)	438, 542
BarI	GAAGNNNNNNTAC	2 cut(s)	745, 777
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	4 cut(s)	119, 236, 677, 750
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	2 cut(s)	378, 384
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	648
BisI	GCNGC	3 cut(s)	6, 156, 699
BlsI	GCNGC	3 cut(s)	7, 157, 700
Bme1390I	CCNGG	2 cut(s)	378, 384
BmgT120I	GGNCC	3 cut(s)	380, 434, 435
BmiI	GGNNCC	2 cut(s)	435, 436
BmrFI	CCNGG	2 cut(s)	378, 384
BmsI	GCATC	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 383, 452
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	378, 384
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	3 cut(s)	299, 688, 742
BseLI	CCNNNNNNNGG	3 cut(s)	280, 383, 452
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	274
BsePI	GCGCGC	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	685
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	26, 382, 436
BsiHKAI	GWGCWC	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	280, 383, 452
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	26, 382, 436
Bsp119I	TTCGAA	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	438, 542
BspACI	CCGC	2 cut(s)	156, 201
BspANI	GGCC	3 cut(s)	26, 382, 436
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	435, 436
BspQI	GCTCTTC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	377
BssHII	GCGCGC	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	378, 384
Bst4CI	ACNGT	4 cut(s)	331, 421, 620, 641
Bst6I	CTCTTC	2 cut(s)	61, 530
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	389, 542, 607
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	299, 688, 742
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	2 cut(s)	389, 391
BstMAI	GTCTC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 388
BstNI	CCWGG	2 cut(s)	378, 384
BstSCI	CCNGG	2 cut(s)	376, 382
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	26, 382, 436
BtsCI	GGATG	3 cut(s)	299, 688, 742
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	2 cut(s)	18, 479
Cac8I	GCNNGC	3 cut(s)	389, 542, 607
CfoI	GCGC	2 cut(s)	389, 391
Cfr13I	GGNCC	3 cut(s)	380, 434, 435
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	4 cut(s)	463, 526, 530, 672
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	61, 530
EarI	CTCTTC	2 cut(s)	61, 530
Ecl136II	GAGCTC	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	438, 542
Eco32I	GATATC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	376, 382
EcoRV	GATATC	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	2 cut(s)	438, 542
FaeI	CATG	4 cut(s)	466, 529, 533, 675
FatI	CATG	4 cut(s)	462, 525, 529, 671
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	6, 156, 699
FokI	GGATG	3 cut(s)	306, 695, 729
FriOI	GRGCYC	2 cut(s)	438, 542
Fsp4HI	GCNGC	3 cut(s)	6, 156, 699
FspBI	CTAG	1 cut(s)	648
GlaI	GCGC	2 cut(s)	388, 390
GluI	GCNGC	3 cut(s)	6, 156, 699
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	26, 382, 436
HhaI	GCGC	2 cut(s)	389, 391
Hin1II	CATG	4 cut(s)	466, 529, 533, 675
Hin6I	GCGC	2 cut(s)	387, 389
HinP1I	GCGC	2 cut(s)	387, 389
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	4 cut(s)	287, 398, 815, 821
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	208, 766, 820, 826
Hpy188III	TCNNGA	4 cut(s)	291, 402, 582, 746
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	111, 761
HpyCH4III	ACNGT	4 cut(s)	331, 421, 620, 641
HpyCH4V	TGCA	6 cut(s)	70, 415, 462, 472, 477, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 388
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	466, 529, 533, 675
HspAI	GCGC	2 cut(s)	387, 389
LguI	GCTCTTC	1 cut(s)	530
LmnI	GCTCC	1 cut(s)	427
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	1 cut(s)	648
MaeIII	GTNAC	4 cut(s)	13, 664, 704, 785
MboII	GAAGA	6 cut(s)	48, 511, 547, 581, 665, 716
MfeI	CAATTG	1 cut(s)	777
MhlI	GDGCHC	2 cut(s)	438, 542
MluCI	AATT	6 cut(s)	137, 244, 627, 777, 797, 829
MlyI	GAGTC	2 cut(s)	296, 824
Mph1103I	ATGCAT	1 cut(s)	531
MspR9I	CCNGG	2 cut(s)	378, 384
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	378, 384
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 388
NlaIII	CATG	4 cut(s)	466, 529, 533, 675
NlaIV	GGNNCC	2 cut(s)	435, 436
NmuCI	GTSAC	2 cut(s)	13, 704
NsiI	ATGCAT	1 cut(s)	531
NspV	TTCGAA	1 cut(s)	191
PalAI	GGCGCGCC	1 cut(s)	387
PauI	GCGCGC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	398, 821
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	7, 157, 700
PleI	GAGTC	2 cut(s)	295, 823
PpsI	GAGTC	2 cut(s)	295, 823
PsiI	TTATAA	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	376, 382
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	376, 382
PspN4I	GGNNCC	2 cut(s)	435, 436
PspOMI	GGGCCC	1 cut(s)	434
PspPI	GGNCC	3 cut(s)	380, 434, 435
PteI	GCGCGC	1 cut(s)	387
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	530
SatI	GCNGC	3 cut(s)	6, 156, 699
Sau96I	GGNCC	3 cut(s)	380, 434, 435
SchI	GAGTC	2 cut(s)	296, 824
ScrFI	CCNGG	2 cut(s)	378, 384
SduI	GDGCHC	2 cut(s)	438, 542
SetI	ASST	7 cut(s)	20, 166, 257, 263, 432, 542, 666
SfaNI	GCATC	1 cut(s)	730
SfuI	TTCGAA	1 cut(s)	191
SgsI	GGCGCGCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	6 cut(s)	137, 244, 627, 777, 797, 829
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	156, 201
SspMI	CTAG	1 cut(s)	648
SstI	GAGCTC	1 cut(s)	542
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	376, 382
TaaI	ACNGT	4 cut(s)	331, 421, 620, 641
TaqI	TCGA	3 cut(s)	191, 313, 590
TasI	AATT	6 cut(s)	137, 244, 627, 777, 797, 829
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	398, 821
TscAI	CASTG	2 cut(s)	18, 479
TseFI	GTSAC	2 cut(s)	13, 704
TseI	GCWGC	2 cut(s)	5, 698
Tsp45I	GTSAC	2 cut(s)	13, 704
TspDTI	ATGAA	3 cut(s)	79, 336, 351
TspGWI	ACGGA	2 cut(s)	361, 497
TspRI	CASTG	2 cut(s)	18, 479
Van91I	CCANNNNNTGG	1 cut(s)	280
XspI	CTAG	1 cut(s)	648
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.