Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Reverse (-)

38689749 .. 38772815

Gene Structure 83067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGCCGCAGTGACATCTCAGGCCTCTCTGAAACAACCAAAGCTGCTCCCTTTCTCACCCAAAACCCCGCAAAACCCTCGCCCCACTTTAATCTATGTGCCCTCTTTCACGAACTCAAAACTGAAATCTGGTCTCAAATTGGGAAATGGGTTCGCTGCAAAAGCTTCAATGGTTGTCAATGAGACCGATTCGAAGTCTTCAGTTTCTGAAAAGAGGGCCAACAGCCCCATCATTGTTATTGACAATTATGATAGCTTCACCTACAATCTCTGCCAGTATATGGGAGAGCTTGGATGTCACTTTGAAGTTTATCGCAATGATGAATTAACGGTGGATGAACTAAAAAGGGGCACCCCAAGATTCGGAATATCATTGCAAACTGTGTTGGAGTTAGGACCCATTGTCCCCTTGTTTGGGAATGTTATTCGTTCTCCTTATGGTGTTGTGCATGGGAAGAGCTCTCCCGTGTATTATAATGAGAAGGAGGAAGACAGCTTGTTTGCTGGACTATCAAAATATCACGGTCTTGTAATTGAAAAGGACAGTTTTCCTAGCGAAGAACTTGAAATTACAGCATGGACCGAGGATGGACTGATAATGGCTGCTCGTCACAAGAAATATAGGTATCTTCGGGGTGTCCAGTTCCATCCGAAAGTATCATCACTTCCGAAGGCAGGACAATCGTTCGCAACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

233

Amino Acids

25.83

Weight (kDa)

8.9

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	119 - 225	1.8e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	2 cut(s)	9, 71
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	5 cut(s)	283, 365, 416, 417, 677
AgsI	TTSAA	4 cut(s)	171, 308, 539, 569
AhdI	GACNNNNNGTC	1 cut(s)	404
AluBI	AGCT	6 cut(s)	46, 167, 258, 292, 462, 498
AluI	AGCT	6 cut(s)	46, 167, 258, 292, 462, 498
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	140, 179
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	24, 219
ApeKI	GCWGC	4 cut(s)	5, 46, 158, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspS9I	GGNCC	3 cut(s)	219, 398, 582
AsuHPI	GGTGA	2 cut(s)	51, 253
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	398, 582
BaeGI	GKGCMC	2 cut(s)	105, 356
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
BbsI	GAAGAC	2 cut(s)	192, 498
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	3 cut(s)	33, 145, 592
BccI	CCATC	3 cut(s)	239, 584, 657
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 666, 700
BcoDI	GTCTC	2 cut(s)	140, 179
BfaI	CTAG	1 cut(s)	555
BisI	GCNGC	5 cut(s)	6, 9, 47, 159, 606
BlsI	GCNGC	5 cut(s)	7, 10, 48, 160, 607
Bme18I	GGWCC	2 cut(s)	398, 582
BmeRI	GACNNNNNGTC	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	219, 398, 582
BmiI	GGNNCC	2 cut(s)	355, 400
BpiI	GAAGAC	2 cut(s)	192, 498
Bpu14I	TTCGAA	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	140, 179
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 365, 416, 417, 677
Bse1I	ACTGG	2 cut(s)	277, 643
Bse3DI	GCAATG	2 cut(s)	325, 374
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	4 cut(s)	302, 343, 595, 649
BseLI	CCNNNNNNNGG	5 cut(s)	283, 365, 416, 417, 677
BseMI	GCAATG	2 cut(s)	325, 374
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	277, 643
BseSI	GKGCMC	2 cut(s)	105, 356
BseXI	GCAGC	3 cut(s)	33, 145, 592
BshFI	GGCC	2 cut(s)	26, 221
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	5 cut(s)	283, 365, 416, 417, 677
BsmAI	GTCTC	2 cut(s)	140, 179
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	26, 221
Bso31I	GGTCTC	2 cut(s)	140, 179
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	105, 356, 464
BspACI	CCGC	2 cut(s)	9, 71
BspANI	GGCC	2 cut(s)	26, 221
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	355, 400
BspQI	GCTCTTC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	353
BspTNI	GGTCTC	2 cut(s)	140, 179
BsrDI	GCAATG	2 cut(s)	325, 374
BsrI	ACTGG	2 cut(s)	277, 643
BssECI	CCNNGG	1 cut(s)	585
Bst4CI	ACNGT	4 cut(s)	334, 385, 527, 548
Bst6I	CTCTTC	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	302, 343, 595, 649
BstMAI	GTCTC	2 cut(s)	140, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSLI	GKGCMC	2 cut(s)	105, 356
BstV1I	GCAGC	3 cut(s)	33, 145, 592
BstV2I	GAAGAC	2 cut(s)	192, 498
BsuRI	GGCC	2 cut(s)	26, 221
BtsCI	GGATG	4 cut(s)	302, 343, 595, 649
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	219, 398, 582
CviAII	CATG	2 cut(s)	452, 579
DdeI	CTNAG	1 cut(s)	21
DriI	GACNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	452
Eam1105I	GACNNNNNGTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	464
Eco31I	GGTCTC	2 cut(s)	140, 179
Eco47I	GGWCC	2 cut(s)	398, 582
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	464
FaeI	CATG	2 cut(s)	455, 582
FaiI	YATR	9 cut(s)	99, 252, 282, 284, 441, 453, 477, 580, 624
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	2 cut(s)	451, 578
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	6, 9, 47, 159, 606
FokI	GGATG	4 cut(s)	309, 350, 602, 636
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	5 cut(s)	6, 9, 47, 159, 606
FspBI	CTAG	1 cut(s)	555
GluI	GCNGC	5 cut(s)	6, 9, 47, 159, 606
HaeIII	GGCC	2 cut(s)	26, 221
Hin1II	CATG	2 cut(s)	455, 582
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	2 cut(s)	191, 363
HphI	GGTGA	2 cut(s)	51, 253
Hpy188I	TCNGA	5 cut(s)	33, 211, 368, 654, 672
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	478, 667
HpyCH4III	ACNGT	4 cut(s)	334, 385, 527, 548
HpyCH4V	TGCA	3 cut(s)	161, 379, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	455, 582
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	8, 117, 290, 492, 656, 663
Lsp1109I	GCAGC	3 cut(s)	33, 145, 592
MaeI	CTAG	1 cut(s)	555
MaeIII	GTNAC	3 cut(s)	13, 299, 611
MboII	GAAGA	5 cut(s)	192, 469, 503, 572, 623
MhlI	GDGCHC	3 cut(s)	105, 356, 464
MluCI	AATT	5 cut(s)	140, 247, 326, 534, 570
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	6 cut(s)	37, 90, 115, 210, 481, 580
MseI	TTAA	2 cut(s)	92, 329
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	455, 582
NlaIV	GGNNCC	2 cut(s)	355, 400
NmuCI	GTSAC	3 cut(s)	13, 299, 611
NspV	TTCGAA	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	191, 363
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	5 cut(s)	7, 10, 48, 160, 607
PpuMI	RGGWCCY	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	355, 400
PspPI	GGNCC	3 cut(s)	219, 398, 582
PspPPI	RGGWCCY	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	92, 329
SatI	GCNGC	5 cut(s)	6, 9, 47, 159, 606
Sau96I	GGNCC	3 cut(s)	219, 398, 582
SduI	GDGCHC	3 cut(s)	105, 356, 464
SetI	ASST	8 cut(s)	48, 169, 260, 266, 294, 464, 500, 629
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	2 cut(s)	398, 582
Sse9I	AATT	5 cut(s)	140, 247, 326, 534, 570
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	9, 71
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	334, 385, 527, 548
TaqI	TCGA	1 cut(s)	194
TaqII	GACCGA	2 cut(s)	203, 599
TasI	AATT	5 cut(s)	140, 247, 326, 534, 570
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	191, 363
Tru1I	TTAA	2 cut(s)	92, 329
Tru9I	TTAA	2 cut(s)	92, 329
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	3 cut(s)	13, 299, 611
TseI	GCWGC	4 cut(s)	5, 46, 158, 605
Tsp45I	GTSAC	3 cut(s)	13, 299, 611
TspDTI	ATGAA	2 cut(s)	339, 354
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	398, 582
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.