Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001381

Physical Location & Seq

Genomic Coordinates Forward (+)

51233753 .. 51238673

Gene Structure 4921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0338900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3684 bp

ATGGACAAGAACCCGAGCTCCGCCTCGGATGACGTCACTGTGTTCCTAGACACGAGCCTTGACACCCACTTGGCCATCACCGTCTCCGGCAACGACACCGTTTCCGACCTCAAAAGAAAATTGGAAAATGAGCATCCGTTGAGCTTCGAAGAAATCAAAATTCGAGCTTTGAAGGTGGACCGGAGGGGAACCTTGTATCACCTCTCGGATTCAATGCGTGTTAAATGTGCTGTCAGTGGCGTCGACAGGGAGTGTTTTCTTTTTGCTGATGCTTCTATTATAGAGAAGAGGGGTGAAATTCAGCATGGTTCCCGCAATTTTGGTTCTCGAATTTGTGATAATCCTTTGGTTAGTGGGGCTGATCGTCCTTTTGATGTTCTTAGCAAAAGGTTGTTCAGTGTTGATGATTCGGTACCATTGCTACTAGAGGGCAAGAAGAATAATATTGTAGACCAGAATGGTTCAGTGGATTCTGGTACAGAAACTTTAAAAGATTTGGAGATGGGAATCAAGCATTCTGATGATGATCATTGCAAAACTTCATTTGATGAGACAATCAATGGGCTAGAACCTAAAACACAGGCGGATCGCAGCCGATGTAGTGAGGGGTTTAGAGTTCCCACAGCACAAGAACACAATGAAGATACCTCAAAGGAAGAAATAAGTGAGGCCAAAAGCAGCGCATCTTTGGGAAAAGCTTCACCTTCTTCAAAGAATAGACAACAGAAGGCTAAGCAAAAAAGTGAAGAGACAGCACATCTGAAAGAAAATGACACTCCAGTTTATGGATTCAATGAAGAACAGTCGCGGATAGATATTGTACCTCCAGAAGACTCATTAGGAAATGAGGGTGGAGATGTTCCCTGTGATACGGTGGTAGTAAACAGAACTACTACAGAAGAACCTCCCAGGGCTTCAGCTTCTAATATGGATAACAGGTCAGATTCTGGACTTCATAGGAACAATGATACATACAAAGAAACTGAAGTTTCAGGAAAACACACTGACATTAGATTGGATACATTTATGCACTGCAATACAGCAGTAGAAGATGCTTCACAATCTCAGACTGTTTCAAAGAAAAAGCGCAAGTTTGAAAACATAACTGATCTTGAAGATTCGTTGAAAGAAAACAATGTCTTGATTTGTGATTCTAATAAAGAGGCTTCCCAACAAGATGCTTCTCAATCTTGGACTGCTTCAAAGAAAAGGCGCAAGTTTGAAAAAGTAACTGATCTTGAAGATTTGATCAAAGAAAACAATGTCTTGATTTGTGATTCTAATAAAGAGGCTTCCCAACCAGAAATTACATCTGAACTCTCTGCAGGGAAAACTGCAAGTACTACCTTAGATGGTTCACTTGCTGAAACCACAGATTTGTTGACAAACAGTTCCAGGGGAAAGAAGAACAAAAAGAAAAAGAAAGCATCGAATCCTCTGCACCAAGTAGTTGATGCAGCTCCTTCTGGAAACGGTGATATGGAAGAGAGATCTATGGTTGCTTCTGCAGGAATTAATAATAAAAATTCAAGTGGAGAAGATGTAGCACCTATCAGTAGACTAGGTCCGAAGGAAGATAACTGCGCTTCTATCCGAGAGTTGCAGGAAAATCGTAAAGCACCCTCTTCACTTGATTTTAATAAAGCTACTGAAGAAAAACCAGAAGGTCATCCTCCCCTTGTTGTGAAAGCTCCTAGTGAAAATGGAACAAGTTCAGCTGAAAGAGTTCGAGAGAAGAGAGAACCATCACAGACAAATGACTCGGAAGCAATGCTGTCTGAAAGCCAGGGTAAAACAGATGGGAACAATGCAAAACTAATTGTGACATCTGAATTATTGGATACTAATGAACCTGTCACCCCTAGTAAGAAGAAAAGGAAGAAAAGGAAGACCAAGGATTCCGTCGGTGCAGAACACATTGTAGATTCTCAGTGTGATATTTCATTGGCTGAACCTCATGAAGATGTACATGGTCAACAGGATAGTGATAAAGCTAAGAACGAGGAGAGTAATTTTTCTCAGAAAAATGGGAAAGACGTATCAGAAAAGGATACAGAGAGTTGCCATTTAGTTATGGAACCTGTCACCCCTAGTAAGAAGAAAAAGAAGAAAAGGAAGACCAAGGATTCCACCAGTGCAGAACACATTGTAGATTCTCAGTGTGATATTTCATTGGCTGAACCTCATGAAGCTGTACATGGTGAACAGGACAGTGATAAAGCTAAGAACGAGGAGAGTAATTTTTCTCAGAAAAATGGGAAAGACATATCAGAAAAGGATACAAAGAGTTGCCATTTAGTTATGGAAGCTGATAAGTGTGATGGCAATGAGGTTGAAACGTCACAGCAAGTTGGCAAAACTCCAGCAAATGCAGAGAGTACGAAAAAGAAATCGAAGAGGAAACATGATGCCATGACAAAAGATCTCCAGAAGTTGGAAGCAGAAGAGAAGAGTGCTAGTCACCAGGATCCTGCTCTAACAACTGATAATAGAACTGAGGCAGTAGCCAGCAAAAGAAAGAAAAGTAAGCTGGCAAAAACAACTCTGATCGATCAGTCAAATGCAAAATGTCTGGAATCTGGTAGCGAGTATGGAGTTCAAATTGGTAGTCTCCATGCTTGCTCAAATTTCATGTCTGAGTCTACTAAACTTCCTTCCCATGCACAAGAACACATTGCTGGGATGTCTCTCAAACCTAATCTTTCTGGCAACCATGAGGAGGTTTCTTGTGAAGGAGAAGAGATTAACTTTCATAAATATATGGTGCCTAGCCAAAGCAAGAATGAAGTTGTTGCTTCTGGTGAAGTACATGCTGAAGAGGTGACGAAATCAAAAAAAGCGGATAACAAGCAGAAGCCTAAAAAGAACCGCAAAGCGGTTGATTCAAGTGGCTGCTCATGGGATCTGCAAAGTCCACTCAAGTCGCATGATAACCAAGGGATTGGTGAAAAGTCTGAAGCTAGCAAATCTAGCTCCATACAACCGCATGGATCAATATCTAATGTTGATGGTGTTGTGCCTCAGCCCGAGGAAATTGTTCCCAAGAAAACTGGGACTAAAGCCCAATCATCTGATGCATCTGGTAAAATAAATTCCATTCCCAAGGTAGCTGGAAAGCGCAGTCTTGCCAATGGTTCTGGGGCCAATAGTATTACCGAGAAAAAGAATGAAGCTGTTGCTATATCAAGTTCTAAGACGGAAAAATCAAACAATAAAGACCAAAAGAAACCAGTTAAGAAGCACCAATCAGGTGTGAGTCAGAATGTTGTGGCCAGTGGAAAAGCTTCTGGTAATGATGATGGGGAAGTGTTGAATAGCTCAAAAGGCAAGAAGAGCTCAGCGACACCGTTGGCCCCTGAGTACAGGAATAAAAGTTCTGAAGGCAAAGATGGATTTGTTGATTCGGGTGCCAGCACCACCTCGTCTGATTACTCATTGTCCTCTGAATCTGACTACTCAGATGGTGAAAGCAATGCAGGATCTTGTGCCTCATCAGGGAAGAAGAATACAGGGACAAGCGGTTATTCTAGCATAAAGGGTAAACTGACAAGAAGGCTAAAAAACGATGAGATTTTTCTAAATTCAAGCGTCTACAAGAAGGCCAAACTTGCCGCATCTCAATCACAACTCGAAGAAGACAGCCAGGCTCCTGAATTTGTTCCAGACAGTCAGCCTGCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

GATase

Protein Analysis

1227

Amino Acids

133.25

Weight (kDa)

5.98

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24807 AT1G24909 AT1G25083 AT1G25155 AT1G25220 AT1G25220 AT5G57890
fragaria_vesca	FvH4_4g33060
malus_domestica	MD13G1016400.v1.1 MD16G1013900.v1.1
prunus_persica	Prupe.1G337100_v2.0.a1
pyrus_communis	pycom13g01410 pycom16g01310
rosa_chinensis	RchiOBHm_Chr3g0486701 RchiOBHm_Chr3g0486721 RchiOBHm_Chr4g0388381 RchiOBHm_Chr4g0388411 RchiOBHm_Chr4g0388431 RchiOBHm_Chr4g0442101 RchiOBHm_Chr4g0442111
rosa_laevigata	RLG00000010056
rosa_multiflora	Rmu_sc0000753.1_g000008 Rmu_sc0001949.1_g000032 Rmu_sc0001949.1_g000033 Rmu_sc0002501.1_g000003 Rmu_sc0015680.1_g000001 Rmu_sc0018709.1_g000002 Rmu_sc0018709.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314730 Rroxscaffold_4G00314740 Rroxscaffold_4G00314750 Rroxscaffold_4G00314770 Rroxscaffold_4G00314790 Rroxscaffold_4G00314820 Rroxscaffold_5G00334930 Rroxscaffold_5G00383020
rosa_rugosa	Rorug04G0338900 Rorug04G0338900 Rorug04G0339000
rosa_samantha	Rh3AG276100 Rh3AG276300 Rh4AG022400 Rh4AG390400 Rh4BG016000 Rh4BG016100 Rh4BG016300 Rh4BG404000 Rh4CG023200 Rh4CG023400 Rh4CG419000 Rh4DG397000
rosa_wichuraiana	Rw4G001550 Rw4G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	3 cut(s)	412, 2764, 3407
AccB7I	CCANNNNNTGG	2 cut(s)	785, 2434
AccI	GTMKAC	5 cut(s)	243, 450, 1558, 2642, 3591
AccII	CGCG	1 cut(s)	808
AclWI	GGATC	6 cut(s)	594, 2462, 2475, 2910, 2998, 3487
AcoI	YGGCCR	2 cut(s)	72, 3270
AcsI	RAATTY	8 cut(s)	159, 297, 330, 1525, 2626, 3091, 3580, 3653
AcuI	CTGAAG	6 cut(s)	900, 1005, 1671, 2835, 2976, 3399
AcyI	GRCGYC	2 cut(s)	33, 240
AfaI	GTAC	9 cut(s)	414, 478, 822, 1342, 1968, 2196, 2380, 2808, 3362
AfiI	CCNNNNNNNGG	5 cut(s)	785, 2434, 2719, 2875, 3495
AjnI	CCWGG	5 cut(s)	908, 1394, 1785, 2463, 3642
AloI	GAACNNNNNNTCC	3 cut(s)	34, 3358, 3390
Alw21I	GWGCWC	2 cut(s)	20, 3338
Alw26I	GTCTC	5 cut(s)	88, 545, 743, 2615, 2691
AlwI	GGATC	6 cut(s)	594, 2462, 2475, 2910, 2998, 3487
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	2 cut(s)	13, 3026
AoxI	GGCC	6 cut(s)	72, 669, 3141, 3270, 3351, 3600
ApeKI	GCWGC	4 cut(s)	591, 678, 1457, 2892
ApoI	RAATTY	8 cut(s)	159, 297, 330, 1525, 2626, 3091, 3580, 3653
ArsI	GACNNNNNNTTYG	4 cut(s)	2593, 2618, 2625, 2650
AseI	ATTAAT	1 cut(s)	1515
Asp700I	GAANNNNTTC	6 cut(s)	697, 1711, 1725, 3036, 3283, 3657
Asp718I	GGTACC	1 cut(s)	412
AspLEI	GCGC	5 cut(s)	683, 1089, 1215, 1586, 3120
AspS9I	GGNCC	4 cut(s)	178, 1565, 3141, 3352
AsuII	TTCGAA	1 cut(s)	147
AsuNHI	GCTAGC	1 cut(s)	2960
AvaI	CYCGRG	2 cut(s)	13, 3026
AvaII	GGWCC	2 cut(s)	178, 1565
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BalI	TGGCCA	2 cut(s)	74, 3272
BamHI	GGATCC	1 cut(s)	2467
BanI	GGYRCC	3 cut(s)	412, 2764, 3407
BanII	GRGCYC	2 cut(s)	20, 3338
BauI	CACGAG	1 cut(s)	52
BbsI	GAAGAC	4 cut(s)	837, 1895, 2123, 3642
Bbv12I	GWGCWC	2 cut(s)	20, 3338
BbvCI	CCTCAGC	1 cut(s)	3021
BbvI	GCAGC	4 cut(s)	603, 690, 1469, 2879
BcgI	CGANNNNNNTGC	4 cut(s)	1420, 1454, 1592, 1626
BciT130I	CCWGG	5 cut(s)	910, 1396, 1787, 2465, 3644
BciVI	GTATCC	4 cut(s)	1012, 1834, 2044, 2272
BclI	TGATCA	2 cut(s)	526, 1248
BcoDI	GTCTC	5 cut(s)	88, 545, 743, 2615, 2691
BfmI	CTRYAG	3 cut(s)	894, 1323, 1506
BfuI	GTATCC	4 cut(s)	1012, 1834, 2044, 2272
BglII	AGATCT	2 cut(s)	1490, 2422
BisI	GCNGC	5 cut(s)	592, 679, 1458, 2893, 3612
BlpI	GCTNAGC	2 cut(s)	732, 3337
BlsI	GCNGC	5 cut(s)	593, 680, 1459, 2894, 3613
BmcAI	AGTACT	1 cut(s)	1342
Bme1390I	CCNGG	5 cut(s)	910, 1396, 1787, 2465, 3644
Bme18I	GGWCC	2 cut(s)	178, 1565
BmeT110I	CYCGRG	2 cut(s)	13, 3026
BmgT120I	GGNCC	4 cut(s)	178, 1565, 3141, 3352
BmrFI	CCNGG	5 cut(s)	910, 1396, 1787, 2465, 3644
BmrI	ACTGGG	1 cut(s)	3060
BmtI	GCTAGC	1 cut(s)	2964
BmuI	ACTGGG	1 cut(s)	3060
BpiI	GAAGAC	4 cut(s)	837, 1895, 2123, 3642
BpmI	CTGGAG	4 cut(s)	762, 810, 2346, 2411
Bpu10I	CCTNAGC	1 cut(s)	3021
Bpu1102I	GCTNAGC	2 cut(s)	732, 3337
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	2903
Bsa29I	ATCGAT	1 cut(s)	2550
BsaBI	GATNNNNATC	3 cut(s)	506, 525, 2995
BsaHI	GRCGYC	2 cut(s)	33, 240
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 1527, 1557
Bsc4I	CCNNNNNNNGG	5 cut(s)	785, 2434, 2719, 2875, 3495
Bse1I	ACTGG	5 cut(s)	779, 2133, 3055, 3230, 3273
Bse3DI	GCAATG	6 cut(s)	416, 529, 1776, 2332, 2673, 3478
Bse8I	GATNNNNATC	3 cut(s)	506, 525, 2995
BseBI	CCWGG	5 cut(s)	910, 1396, 1787, 2465, 3644
BseCI	ATCGAT	1 cut(s)	2550
BseGI	GGATG	4 cut(s)	34, 133, 1669, 2688
BseJI	GATNNNNATC	3 cut(s)	506, 525, 2995
BseLI	CCNNNNNNNGG	5 cut(s)	785, 2434, 2719, 2875, 3495
BseMI	GCAATG	6 cut(s)	416, 529, 1776, 2332, 2673, 3478
BseNI	ACTGG	5 cut(s)	779, 2133, 3055, 3230, 3273
BseRI	GAGGAG	3 cut(s)	2018, 2246, 2732
BseXI	GCAGC	4 cut(s)	603, 690, 1469, 2879
BseYI	CCCAGC	1 cut(s)	2678
BsgI	GTGCAG	3 cut(s)	1424, 1929, 2157
Bsh1236I	CGCG	1 cut(s)	808
BshFI	GGCC	6 cut(s)	74, 671, 3143, 3272, 3353, 3602
BshNI	GGYRCC	3 cut(s)	412, 2764, 3407
BshVI	ATCGAT	1 cut(s)	2550
BsiHKAI	GWGCWC	2 cut(s)	20, 3338
BsiHKCI	CYCGRG	2 cut(s)	13, 3026
BsiSI	CCGG	2 cut(s)	87, 181
BslFI	GGGAC	2 cut(s)	3067, 3526
BslI	CCNNNNNNNGG	5 cut(s)	785, 2434, 2719, 2875, 3495
BsmAI	GTCTC	5 cut(s)	88, 545, 743, 2615, 2691
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	3067, 3526
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	6 cut(s)	74, 671, 3143, 3272, 3353, 3602
BsoBI	CYCGRG	2 cut(s)	13, 3026
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	20, 3338
Bsp1407I	TGTACA	2 cut(s)	1966, 2194
Bsp1720I	GCTNAGC	2 cut(s)	732, 3337
BspANI	GGCC	6 cut(s)	74, 671, 3143, 3272, 3353, 3602
BspDI	ATCGAT	1 cut(s)	2550
BspFNI	CGCG	1 cut(s)	808
BspHI	TCATGA	2 cut(s)	1957, 2185
BspMAI	CTGCAG	2 cut(s)	1327, 1510
BspOI	GCTAGC	1 cut(s)	2964
BspPI	GGATC	6 cut(s)	594, 2462, 2475, 2910, 2998, 3487
BspQI	GCTCTTC	1 cut(s)	3326
BspT104I	TTCGAA	1 cut(s)	147
BspT107I	GGYRCC	3 cut(s)	412, 2764, 3407
BsrDI	GCAATG	6 cut(s)	416, 529, 1776, 2332, 2673, 3478
BsrGI	TGTACA	2 cut(s)	1966, 2194
BsrI	ACTGG	5 cut(s)	779, 2133, 3055, 3230, 3273
BssNI	GRCGYC	2 cut(s)	33, 240
BssSI	CACGAG	1 cut(s)	52
BssT1I	CCWWGG	4 cut(s)	1893, 2121, 2935, 3102
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	5 cut(s)	910, 1396, 1787, 2465, 3644
BstACI	GRCGYC	2 cut(s)	33, 240
BstAUI	TGTACA	2 cut(s)	1966, 2194
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	6 cut(s)	2509, 2532, 2620, 2962, 3412, 3675
BstF5I	GGATG	4 cut(s)	34, 133, 1669, 2688
BstFNI	CGCG	1 cut(s)	808
BstHHI	GCGC	5 cut(s)	683, 1089, 1215, 1586, 3120
BstMAI	GTCTC	5 cut(s)	88, 545, 743, 2615, 2691
BstMWI	GCNNNNNNNGC	4 cut(s)	2970, 3324, 3333, 3608
BstNI	CCWGG	5 cut(s)	910, 1396, 1787, 2465, 3644
BstNSI	RCATGY	1 cut(s)	2813
BstSCI	CCNGG	5 cut(s)	908, 1394, 1785, 2463, 3642
BstSFI	CTRYAG	3 cut(s)	894, 1323, 1506
BstUI	CGCG	1 cut(s)	808
BstV1I	GCAGC	4 cut(s)	603, 690, 1469, 2879
BstV2I	GAAGAC	4 cut(s)	837, 1895, 2123, 3642
BstX2I	RGATCY	5 cut(s)	1490, 2422, 2467, 2902, 3479
BstXI	CCANNNNNNTGG	1 cut(s)	2942
BstYI	RGATCY	5 cut(s)	1490, 2422, 2467, 2902, 3479
Bsu15I	ATCGAT	1 cut(s)	2550
BsuI	GTATCC	4 cut(s)	1012, 1834, 2044, 2272
BsuRI	GGCC	6 cut(s)	74, 671, 3143, 3272, 3353, 3602
BsuTUI	ATCGAT	1 cut(s)	2550
BtsCI	GGATG	4 cut(s)	34, 133, 1669, 2688
BtsI	GCAGTG	1 cut(s)	1030
Cac8I	GCNNGC	6 cut(s)	2509, 2532, 2620, 2962, 3412, 3675
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	2 cut(s)	1957, 2185
CfoI	GCGC	5 cut(s)	683, 1089, 1215, 1586, 3120
Cfr13I	GGNCC	4 cut(s)	178, 1565, 3141, 3352
ClaI	ATCGAT	1 cut(s)	2550
CseI	GACGC	2 cut(s)	229, 3577
Csp6I	GTAC	9 cut(s)	413, 477, 821, 1341, 1967, 2195, 2379, 2807, 3361
CviQI	GTAC	9 cut(s)	413, 477, 821, 1341, 1967, 2195, 2379, 2807, 3361
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	2 cut(s)	72, 3270
EciI	GGCGGA	2 cut(s)	10, 599
Ecl136II	GAGCTC	2 cut(s)	18, 3336
Eco130I	CCWWGG	4 cut(s)	1893, 2121, 2935, 3102
Eco24I	GRGCYC	2 cut(s)	20, 3338
Eco47I	GGWCC	2 cut(s)	178, 1565
Eco53kI	GAGCTC	2 cut(s)	18, 3336
Eco57I	CTGAAG	6 cut(s)	900, 1005, 1671, 2835, 2976, 3399
Eco88I	CYCGRG	2 cut(s)	13, 3026
EcoICRI	GAGCTC	2 cut(s)	18, 3336
EcoRII	CCWGG	5 cut(s)	908, 1394, 1785, 2463, 3642
EcoT14I	CCWWGG	4 cut(s)	1893, 2121, 2935, 3102
EcoT22I	ATGCAT	1 cut(s)	3079
EcoT38I	GRGCYC	2 cut(s)	20, 3338
ErhI	CCWWGG	4 cut(s)	1893, 2121, 2935, 3102
Esp3I	CGTCTC	1 cut(s)	88
FaqI	GGGAC	2 cut(s)	3067, 3526
FauI	CCCGC	1 cut(s)	320
FbaI	TGATCA	2 cut(s)	526, 1248
FblI	GTMKAC	5 cut(s)	243, 450, 1558, 2642, 3591
Fnu4HI	GCNGC	5 cut(s)	592, 679, 1458, 2893, 3612
FokI	GGATG	4 cut(s)	41, 120, 1656, 2695
FriOI	GRGCYC	2 cut(s)	20, 3338
Fsp4HI	GCNGC	5 cut(s)	592, 679, 1458, 2893, 3612
GlaI	GCGC	5 cut(s)	682, 1088, 1214, 1585, 3119
GluI	GCNGC	5 cut(s)	592, 679, 1458, 2893, 3612
GsaI	CCCAGC	1 cut(s)	2682
GsuI	CTGGAG	4 cut(s)	762, 810, 2346, 2411
HaeIII	GGCC	6 cut(s)	74, 671, 3143, 3272, 3353, 3602
HapII	CCGG	2 cut(s)	87, 181
HgaI	GACGC	2 cut(s)	229, 3577
HhaI	GCGC	5 cut(s)	683, 1089, 1215, 1586, 3120
Hin1I	GRCGYC	2 cut(s)	33, 240
Hin6I	GCGC	5 cut(s)	681, 1087, 1213, 1584, 3118
HinP1I	GCGC	5 cut(s)	681, 1087, 1213, 1584, 3118
HincII	GTYRAC	3 cut(s)	244, 1383, 1976
HindII	GTYRAC	3 cut(s)	244, 1383, 1976
HindIII	AAGCTT	2 cut(s)	696, 3282
HpaII	CCGG	2 cut(s)	87, 181
Hpy99I	CGWCG	2 cut(s)	245, 1907
HpyCH4IV	ACGT	3 cut(s)	33, 2037, 2339
HpyF10VI	GCNNNNNNNGC	4 cut(s)	2970, 3324, 3333, 3608
HpySE526I	ACGT	3 cut(s)	33, 2037, 2339
Hsp92I	GRCGYC	2 cut(s)	33, 240
HspAI	GCGC	5 cut(s)	681, 1087, 1213, 1584, 3118
KpnI	GGTACC	1 cut(s)	416
Ksp22I	TGATCA	2 cut(s)	526, 1248
LguI	GCTCTTC	1 cut(s)	3326
LmnI	GCTCC	5 cut(s)	23, 1465, 1696, 2978, 3652
Lsp1109I	GCAGC	4 cut(s)	603, 690, 1469, 2879
MaeII	ACGT	3 cut(s)	33, 2037, 2339
MaeIII	GTNAC	8 cut(s)	34, 1228, 1822, 1855, 2083, 2340, 2459, 2821
MflI	RGATCY	5 cut(s)	1490, 2422, 2467, 2902, 3479
MhlI	GDGCHC	2 cut(s)	20, 3338
MlsI	TGGCCA	2 cut(s)	74, 3272
MluNI	TGGCCA	2 cut(s)	74, 3272
MlyI	GAGTC	4 cut(s)	827, 1754, 2648, 3265
MmeI	TCCRAC	2 cut(s)	129, 2415
Mox20I	TGGCCA	2 cut(s)	74, 3272
Mph1103I	ATGCAT	1 cut(s)	3079
MroXI	GAANNNNTTC	6 cut(s)	697, 1711, 1725, 3036, 3283, 3657
MscI	TGGCCA	2 cut(s)	74, 3272
MseI	TTAA	6 cut(s)	222, 488, 1515, 1638, 2745, 3234
MslI	CAYNNNNRTG	2 cut(s)	519, 1962
Msp20I	TGGCCA	2 cut(s)	74, 3272
MspA1I	CMGCKG	1 cut(s)	1718
MspI	CCGG	2 cut(s)	87, 181
MspR9I	CCNGG	5 cut(s)	910, 1396, 1787, 2465, 3644
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	5 cut(s)	910, 1396, 1787, 2465, 3644
MvnI	CGCG	1 cut(s)	808
MwoI	GCNNNNNNNGC	4 cut(s)	2970, 3324, 3333, 3608
NheI	GCTAGC	1 cut(s)	2960
NmuCI	GTSAC	7 cut(s)	34, 1822, 1855, 2083, 2340, 2459, 2821
NsiI	ATGCAT	1 cut(s)	3079
NspI	RCATGY	1 cut(s)	2813
NspV	TTCGAA	1 cut(s)	147
PagI	TCATGA	2 cut(s)	1957, 2185
PasI	CCCWGGG	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	3326
PctI	GAATGC	1 cut(s)	514
PdmI	GAANNNNTTC	6 cut(s)	697, 1711, 1725, 3036, 3283, 3657
PflFI	GACNNNGTC	1 cut(s)	1563
PflMI	CCANNNNNTGG	2 cut(s)	785, 2434
PkrI	GCNGC	5 cut(s)	593, 680, 1459, 2894, 3613
PleI	GAGTC	4 cut(s)	827, 1754, 2647, 3264
PpsI	GAGTC	4 cut(s)	827, 1754, 2647, 3264
PshBI	ATTAAT	1 cut(s)	1515
Psp124BI	GAGCTC	2 cut(s)	20, 3338
Psp6I	CCWGG	5 cut(s)	908, 1394, 1785, 2463, 3642
PspFI	CCCAGC	1 cut(s)	2678
PspGI	CCWGG	5 cut(s)	908, 1394, 1785, 2463, 3642
PspPI	GGNCC	4 cut(s)	178, 1565, 3141, 3352
PstI	CTGCAG	2 cut(s)	1327, 1510
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	5 cut(s)	1490, 2422, 2467, 2902, 3479
PsyI	GACNNNGTC	1 cut(s)	1563
PvuII	CAGCTG	1 cut(s)	1718
RsaI	GTAC	9 cut(s)	414, 478, 822, 1342, 1968, 2196, 2380, 2808, 3362
RsaNI	GTAC	9 cut(s)	413, 477, 821, 1341, 1967, 2195, 2379, 2807, 3361
RseI	CAYNNNNRTG	2 cut(s)	519, 1962
SacI	GAGCTC	2 cut(s)	20, 3338
SalI	GTCGAC	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	3326
SaqAI	TTAA	6 cut(s)	222, 488, 1515, 1638, 2745, 3234
SatI	GCNGC	5 cut(s)	592, 679, 1458, 2893, 3612
Sau96I	GGNCC	4 cut(s)	178, 1565, 3141, 3352
ScaI	AGTACT	1 cut(s)	1342
SchI	GAGTC	4 cut(s)	827, 1754, 2648, 3265
ScrFI	CCNGG	5 cut(s)	910, 1396, 1787, 2465, 3644
SduI	GDGCHC	2 cut(s)	20, 3338
SfcI	CTRYAG	3 cut(s)	894, 1323, 1506
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	2 cut(s)	178, 1565
SmiMI	CAYNNNNRTG	2 cut(s)	519, 1962
SmlI	CTYRAG	1 cut(s)	2918
SmoI	CTYRAG	1 cut(s)	2918
SspI	AATATT	1 cut(s)	445
SstI	GAGCTC	2 cut(s)	20, 3338
StyD4I	CCNGG	5 cut(s)	908, 1394, 1785, 2463, 3642
StyI	CCWWGG	4 cut(s)	1893, 2121, 2935, 3102
TaiI	ACGT	3 cut(s)	36, 2040, 2342
TaqI	TCGA	9 cut(s)	147, 163, 243, 328, 1430, 1729, 2393, 2550, 3630
TatI	WGTACW	5 cut(s)	1340, 1966, 2194, 2806, 3360
TauI	GCSGC	1 cut(s)	3614
Tru1I	TTAA	6 cut(s)	222, 488, 1515, 1638, 2745, 3234
Tru9I	TTAA	6 cut(s)	222, 488, 1515, 1638, 2745, 3234
TseFI	GTSAC	7 cut(s)	34, 1822, 1855, 2083, 2340, 2459, 2821
TseI	GCWGC	4 cut(s)	591, 678, 1457, 2892
Tsp45I	GTSAC	7 cut(s)	34, 1822, 1855, 2083, 2340, 2459, 2821
TspGWI	ACGGA	3 cut(s)	126, 1891, 3212
Tth111I	GACNNNGTC	1 cut(s)	1563
Van91I	CCANNNNNTGG	2 cut(s)	785, 2434
VpaK11BI	GGWCC	2 cut(s)	178, 1565
VspI	ATTAAT	1 cut(s)	1515
XapI	RAATTY	8 cut(s)	159, 297, 330, 1525, 2626, 3091, 3580, 3653
XceI	RCATGY	1 cut(s)	2813
XmiI	GTMKAC	5 cut(s)	243, 450, 1558, 2642, 3591
XmnI	GAANNNNTTC	6 cut(s)	697, 1711, 1725, 3036, 3283, 3657
ZraI	GACGTC	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	1342
Zsp2I	ATGCAT	1 cut(s)	3079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.