Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

17950569 .. 17952743

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGACGGCGACGACGGTGAATGTCAAACTTTCTCGATCAAATCGTATCTATCGCTCTTCCGAACCAGTGGAAGGAAAAATTGTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCAGTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCCTTCTATGGTGTCATCAAGCCTATTCAAATCGTCAAGAAGACGATCGAAGTTAAGTCTTCTGGCAAAATCCCTCCGGGAACTACAGAGATACCATTCTCTTTGAATCTGAGGGAGCCTGGGGAAGGCATTGTAGAGAAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGATATACCGCGAGGATACTTGCACAAACCTTTGTCTGCAACAATGGAGTTTATTATTGAGAGCGGTAGAGTTGACCTTCCCGAGCGGCCTATTCCTCCGGAAATTGTCATCTTCTACATCACTCAAGACACACAGAGACATCCGTTGCTGCCTGATATTAAGACAGGTGGTTTCCGAGTTACTGGAAAATTAGCCACCCAATGCTCTTTGCAGGATCCACTCAGTGGTGAGTTAACAGTGGAAGCATCTTCAGTTCCTATTACTTCTATTGACATTCACCTACTCCGAGTTGAGTCGATAATTGTAGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGGAGATGTGTGCCGTAACATGACTCTACCCATTTACGTTTTACTACCTCGGCTTTTAATGTGTCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTTCAAATCGAAGCTAGCCAAAGCACAACCCAAGTCTGATCCAACAGCTCCAAGACTATGGATGGCGCTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

327

Amino Acids

36.05

Weight (kDa)

9.03

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	13 - 123	3e-11	Vacuolar protein sorting-associated protein 26
Vps26	PF03643	192 - 282	4.9e-12	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	145, 809
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	2 cut(s)	444, 466
AccI	GTMKAC	1 cut(s)	725
AccII	CGCG	1 cut(s)	391
AccIII	TCCGGA	2 cut(s)	478, 954
AciI	CCGC	5 cut(s)	389, 444, 466, 737, 941
AclWI	GGATC	5 cut(s)	148, 175, 590, 603, 893
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	605
AfiI	CCNNNNNNNGG	3 cut(s)	74, 311, 605
AgsI	TTSAA	4 cut(s)	215, 292, 841, 865
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	173, 874, 908, 978
AluI	AGCT	4 cut(s)	173, 874, 908, 978
Alw26I	GTCTC	3 cut(s)	329, 511, 701
AlwI	GGATC	5 cut(s)	148, 175, 590, 603, 893
Ama87I	CYCGRG	1 cut(s)	461
Aor13HI	TCCGGA	2 cut(s)	478, 954
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	529, 978
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	1 cut(s)	821
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	31, 620, 650, 844
AsuNHI	GCTAGC	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	821
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	233, 237
BbvI	GCAGC	2 cut(s)	516, 965
BccI	CCATC	2 cut(s)	734, 916
BceAI	ACGGC	2 cut(s)	24, 738
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	389
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	3 cut(s)	329, 511, 701
BfaI	CTAG	1 cut(s)	875
BfmI	CTRYAG	2 cut(s)	270, 378
BfoI	RGCGCY	1 cut(s)	929
BfuAI	ACCTGC	2 cut(s)	145, 809
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	3 cut(s)	467, 530, 979
BlsI	GCNGC	3 cut(s)	468, 531, 980
Bme1390I	CCNGG	2 cut(s)	264, 306
Bme18I	GGWCC	1 cut(s)	821
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	3 cut(s)	303, 597, 823
BmrFI	CCNGG	2 cut(s)	264, 306
BmsI	GCATC	3 cut(s)	121, 635, 858
BmtI	GCTAGC	1 cut(s)	878
BpiI	GAAGAC	2 cut(s)	233, 237
BpmI	CTGGAG	2 cut(s)	195, 950
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	305, 788
BsaWI	WCCGGW	2 cut(s)	478, 954
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 311, 605
Bse1I	ACTGG	2 cut(s)	68, 568
BseAI	TCCGGA	2 cut(s)	478, 954
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	305, 788
BseGI	GGATG	4 cut(s)	360, 520, 745, 927
BseLI	CCNNNNNNNGG	3 cut(s)	74, 311, 605
BseMII	CTCAG	4 cut(s)	287, 616, 696, 843
BseNI	ACTGG	2 cut(s)	68, 568
BseXI	GCAGC	2 cut(s)	516, 965
Bsh1236I	CGCG	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	263, 479, 955
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	3 cut(s)	74, 311, 605
BsmAI	GTCTC	3 cut(s)	329, 511, 701
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	1 cut(s)	469
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	461
Bsp13I	TCCGGA	2 cut(s)	478, 954
Bsp143I	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
BspACI	CCGC	5 cut(s)	389, 444, 466, 737, 941
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	4 cut(s)	288, 615, 697, 842
BspEI	TCCGGA	2 cut(s)	478, 954
BspFNI	CGCG	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	303, 597, 823
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	2 cut(s)	145, 809
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	5 cut(s)	148, 175, 590, 603, 893
BspQI	GCTCTTC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	701
BsrBI	CCGCTC	2 cut(s)	444, 466
BsrI	ACTGG	2 cut(s)	68, 568
BssECI	CCNNGG	2 cut(s)	305, 788
BssMI	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	19, 619
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	4 cut(s)	296, 602, 705, 829
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	360, 520, 745, 927
BstFNI	CGCG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	7 cut(s)	41, 143, 170, 234, 598, 901, 970
BstMAI	GTCTC	3 cut(s)	329, 511, 701
BstMBI	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
BstMCI	CGRYCG	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	262, 304
BstSFI	CTRYAG	2 cut(s)	270, 378
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	516, 965
BstV2I	GAAGAC	2 cut(s)	233, 237
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	4 cut(s)	360, 520, 745, 927
BtsIMutI	CAGTG	5 cut(s)	75, 610, 624, 702, 837
BveI	ACCTGC	2 cut(s)	145, 809
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	1 cut(s)	821
CviAII	CATG	2 cut(s)	344, 760
DdeI	CTNAG	4 cut(s)	296, 602, 705, 829
DpnI	GATC	7 cut(s)	40, 142, 169, 233, 597, 900, 969
DpnII	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
DraIII	CACNNNGTG	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	851
FaeI	CATG	2 cut(s)	347, 763
FaiI	YATR	8 cut(s)	195, 333, 345, 386, 761, 847, 857, 919
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	2 cut(s)	343, 759
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	3 cut(s)	467, 530, 979
FokI	GGATG	4 cut(s)	347, 507, 752, 934
Fsp4HI	GCNGC	3 cut(s)	467, 530, 979
FspBI	CTAG	1 cut(s)	875
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	3 cut(s)	467, 530, 979
GsuI	CTGGAG	2 cut(s)	195, 950
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	3 cut(s)	263, 479, 955
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	2 cut(s)	347, 763
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HincII	GTYRAC	3 cut(s)	148, 454, 615
HindII	GTYRAC	3 cut(s)	148, 454, 615
HinfI	GANTC	5 cut(s)	185, 292, 674, 718, 763
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	3 cut(s)	263, 479, 955
HphI	GGTGA	4 cut(s)	31, 620, 650, 844
Hpy166II	GTNNAC	4 cut(s)	148, 454, 615, 726
Hpy188I	TCNGA	5 cut(s)	64, 297, 557, 668, 898
Hpy188III	TCNNGA	6 cut(s)	36, 223, 461, 479, 506, 955
Hpy8I	GTNNAC	4 cut(s)	148, 454, 615, 726
Hpy99I	CGWCG	3 cut(s)	10, 16, 19
HpyAV	CCTTC	6 cut(s)	68, 199, 305, 467, 816, 835
HpyCH4III	ACNGT	2 cut(s)	19, 619
HpyCH4IV	ACGT	2 cut(s)	124, 777
HpyCH4V	TGCA	7 cut(s)	98, 154, 380, 403, 419, 592, 849
HpyF3I	CTNAG	4 cut(s)	296, 602, 705, 829
HpySE526I	ACGT	2 cut(s)	124, 777
Hsp92II	CATG	2 cut(s)	347, 763
HspAI	GCGC	1 cut(s)	926
Kpn2I	TCCGGA	2 cut(s)	478, 954
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	301, 913
Lsp1109I	GCAGC	2 cut(s)	516, 965
LweI	GCATC	3 cut(s)	121, 635, 858
MaeI	CTAG	1 cut(s)	875
MaeII	ACGT	2 cut(s)	124, 777
MaeIII	GTNAC	3 cut(s)	559, 700, 755
MalI	GATC	7 cut(s)	40, 142, 169, 233, 597, 900, 969
MbiI	CCGCTC	2 cut(s)	444, 466
MboI	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
MboII	GAAGA	5 cut(s)	51, 237, 238, 484, 621
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	5 cut(s)	81, 483, 569, 681, 836
MlyI	GAGTC	3 cut(s)	194, 683, 757
MmeI	TCCRAC	1 cut(s)	926
MnlI	CCTC	7 cut(s)	158, 270, 291, 386, 486, 721, 798
Mph1103I	ATGCAT	1 cut(s)	851
MroI	TCCGGA	2 cut(s)	478, 954
MseI	TTAA	4 cut(s)	240, 540, 614, 797
MspA1I	CMGCKG	3 cut(s)	173, 943, 978
MspI	CCGG	3 cut(s)	263, 479, 955
MspR9I	CCNGG	2 cut(s)	264, 306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	391
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
NheI	GCTAGC	1 cut(s)	874
NlaIII	CATG	2 cut(s)	347, 763
NlaIV	GGNNCC	3 cut(s)	303, 597, 823
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	851
PciSI	GCTCTTC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	292, 718
PflMI	CCANNNNNTGG	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	468, 531, 980
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	3 cut(s)	193, 682, 757
PpsI	GAGTC	3 cut(s)	193, 682, 757
PpuMI	RGGWCCY	1 cut(s)	821
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	303, 597, 823
PspPI	GGNCC	1 cut(s)	821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	595
PvuI	CGATCG	1 cut(s)	234
PvuII	CAGCTG	2 cut(s)	173, 978
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	240, 540, 614, 797
SatI	GCNGC	3 cut(s)	467, 530, 979
Sau3AI	GATC	7 cut(s)	38, 140, 167, 231, 595, 898, 967
Sau96I	GGNCC	1 cut(s)	821
SchI	GAGTC	3 cut(s)	194, 683, 757
ScrFI	CCNGG	2 cut(s)	264, 306
SfaNI	GCATC	3 cut(s)	121, 635, 858
SfcI	CTRYAG	2 cut(s)	270, 378
SinI	GGWCC	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	81, 483, 569, 681, 836
SsiI	CCGC	5 cut(s)	389, 444, 466, 737, 941
SspMI	CTAG	1 cut(s)	875
StyD4I	CCNGG	2 cut(s)	262, 304
TaaI	ACNGT	2 cut(s)	19, 619
TaiI	ACGT	2 cut(s)	127, 780
TaqI	TCGA	5 cut(s)	37, 104, 234, 677, 869
TasI	AATT	5 cut(s)	81, 483, 569, 681, 836
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	2 cut(s)	292, 718
Tru1I	TTAA	4 cut(s)	240, 540, 614, 797
Tru9I	TTAA	4 cut(s)	240, 540, 614, 797
TscAI	CASTG	5 cut(s)	75, 610, 624, 709, 837
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	529, 978
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	3 cut(s)	121, 513, 799
TspRI	CASTG	5 cut(s)	75, 610, 624, 709, 837
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	1 cut(s)	875
Zsp2I	ATGCAT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.