Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

54382273 .. 54385284

Gene Structure 3012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGAAAGGTGATATTGGAATTTTCCAGGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTCAACTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTGAACAAAATTGTTCAGCTTAGACCTGCTGGAAAGATTGCTTCAGGCATAACCGAGATACTGTTTTCTATGCATATCAGGCAACCAAGAAAAGATAACCTCGAAAAGTTCTATGAGACATTCCATGGAGGAAATATTAACATTCAGGTGCATCTTTCTGCCTTGGAAAGTACACATGTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

123

Amino Acids

13.32

Weight (kDa)

9.4

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	10 - 114	1.5e-07	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	112, 220
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	1 cut(s)	98
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	21, 87
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	146, 296
AlwI	GGATC	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	21, 87
AsuHPI	GGTGA	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	146, 296
BfuAI	ACCTGC	2 cut(s)	112, 220
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	102, 346
BpiI	GAAGAC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	310, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	310, 348
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	39
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	146, 296
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	48, 107
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	98
BspMI	ACCTGC	2 cut(s)	112, 220
BspPI	GGATC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	310, 348
BssMI	GATC	2 cut(s)	48, 107
BssT1I	CCWWGG	2 cut(s)	310, 348
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	51, 110
BstMAI	GTCTC	2 cut(s)	146, 296
BstMBI	GATC	2 cut(s)	48, 107
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	79
BveI	ACCTGC	2 cut(s)	112, 220
CaiI	CAGNNNCTG	1 cut(s)	34
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	311, 362
CviJI	RGCY	3 cut(s)	140, 175, 205
CviKI_1	RGCY	3 cut(s)	140, 175, 205
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	50, 109
DpnII	GATC	2 cut(s)	48, 107
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	310, 348
Eco52I	CGGCCG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	310, 348
EcoT22I	ATGCAT	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	310, 348
FaeI	CATG	2 cut(s)	314, 365
FaiI	YATR	9 cut(s)	53, 84, 149, 236, 257, 261, 300, 312, 363
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	310, 361
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	314, 365
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	115, 359
Hpy188I	TCNGA	1 cut(s)	189
Hpy8I	GTNNAC	2 cut(s)	115, 359
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	121, 259, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	314, 365
Kzo9I	GATC	2 cut(s)	48, 107
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	102, 346
MalI	GATC	2 cut(s)	50, 109
MboI	GATC	2 cut(s)	48, 107
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	3 cut(s)	21, 87, 195
MnlI	CCTC	4 cut(s)	34, 125, 296, 308
Mph1103I	ATGCAT	1 cut(s)	261
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	48, 107
NlaIII	CATG	2 cut(s)	314, 365
NsiI	ATGCAT	1 cut(s)	261
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	48, 107
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	6 cut(s)	13, 126, 207, 214, 288, 336
SfaNI	GCATC	2 cut(s)	102, 346
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	21, 87, 195
SsiI	CCGC	1 cut(s)	98
SspI	AATATT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	310, 348
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	182, 288
TasI	AATT	3 cut(s)	21, 87, 195
TatI	WGTACW	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	21, 87
XceI	RCATGY	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.