Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

34316945 .. 34329719

Gene Structure 12775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG280200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCTCAACTGAAATCAGGTTTGCTGATCCATGGGTTTTGGCTGTTTGGGTCTACGGTGGTGAGCGGGGTCAGGCAGGAGTGGGAGCGCTGGTCTTGGGGATATGACATTGGTGGTGGAGCTGCAGGAGTGGTGGGGAAGCGACGGTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

86

Amino Acids

9.71

Weight (kDa)

6.05

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	2 cut(s)	101, 171
AclWI	GGATC	1 cut(s)	127
AfeI	AGCGCT	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	3 cut(s)	29, 227, 258
AluI	AGCT	3 cut(s)	29, 227, 258
AlwI	GGATC	1 cut(s)	127
Aor13HI	TCCGGA	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	227, 255
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	228, 256
BlsI	GCNGC	2 cut(s)	229, 257
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse1I	ACTGG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	2 cut(s)	101, 171
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	163, 252
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	195
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	29, 148, 227, 258
CviKI_1	RGCY	4 cut(s)	29, 148, 227, 258
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	140
FaiI	YATR	3 cut(s)	11, 138, 210
FatI	CATG	1 cut(s)	136
FauI	CCCGC	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	228, 256
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	228, 256
FspBI	CTAG	1 cut(s)	259
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	2 cut(s)	228, 256
HaeII	RGCGCY	1 cut(s)	196
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	56, 83
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	163, 252
HpyCH4V	TGCA	2 cut(s)	230, 255
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	190, 224
LpnPI	CCDG	8 cut(s)	60, 68, 69, 108, 163, 167, 181, 216
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	259
MalI	GATC	1 cut(s)	134
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	1 cut(s)	132
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	55
MspI	CCGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	229, 257
PstI	CTGCAG	1 cut(s)	232
SatI	GCNGC	2 cut(s)	228, 256
Sau3AI	GATC	1 cut(s)	132
SetI	ASST	4 cut(s)	31, 127, 229, 260
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	101, 171
SspMI	CTAG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	163, 252
TasI	AATT	1 cut(s)	36
TseI	GCWGC	2 cut(s)	227, 255
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.