Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

908884 .. 911539

Gene Structure 2656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG014100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCGATTGAGCTCAAGCTTTCCCGGATTAATCGAGTTTATCGTCCTTGTGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTTCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTCAACTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTGAACAAAATTGTTGAGCTTAGACCTGCTGGAAAGATTGCTTCAGGCATAACCGAGATACCGTTTTCTATGCATATCAGGCAACCAAGAGAAGATAACCTCGAAAAGTTCTATGAGACGTTCCATGGAGGAAATATTAACATTCAGTATTTAGTGACTGTAGATATATCGAGAGGATACCTGTATAAGTCGTTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCTCAACTGAAATCAGGTTTGCTGGCTACTTCCGGTGGATTTCGAATCATTGGAAAAATGGCCACTCAATGTTCTTTATCGGATCCCGTTAGTGGTGAACTAACAGTAGAAGCATCTGCTGTTCCAATTTCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAGACTACACAGATAGCAGATGGAGATGTCTGTCATAATATGACTCTGCCCATTCATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGTTGTCATAGTCATAACATTTCAGTCAGAGGTAGCCAAATTGCATTCAAAATCTGATCCTACAACTCCCAGACTATGGCTTGCAATGGAGACTCTACCGCTTGAACTTGTTAGAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

323

Amino Acids

35.51

Weight (kDa)

7.09

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	11 - 289	3.6e-28	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	715
Acc36I	ACCTGC	2 cut(s)	133, 241
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	3 cut(s)	119, 512, 947
AclWI	GGATC	4 cut(s)	136, 596, 609, 899
AcoI	YGGCCR	2 cut(s)	159, 579
AcsI	RAATTY	2 cut(s)	108, 842
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	611, 694, 924
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	5 cut(s)	93, 428, 842, 897, 953
AluBI	AGCT	4 cut(s)	13, 19, 226, 440
AluI	AGCT	4 cut(s)	13, 19, 226, 440
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	4 cut(s)	167, 317, 823, 932
AlwI	GGATC	4 cut(s)	136, 596, 609, 899
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	3 cut(s)	159, 579, 827
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	108, 842
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	827
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	626
AsuII	TTCGAA	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	75, 81
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	3 cut(s)	119, 466, 740
BceAI	ACGGC	1 cut(s)	174
BciVI	GTATCC	2 cut(s)	377, 490
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	4 cut(s)	167, 317, 823, 932
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	2 cut(s)	366, 813
BfuAI	ACCTGC	2 cut(s)	133, 241
BfuI	GTATCC	2 cut(s)	377, 490
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	827
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	123, 641
BpiI	GAAGAC	2 cut(s)	75, 81
Bpu14I	TTCGAA	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	2 cut(s)	466, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	611, 694, 924
Bse1I	ACTGG	2 cut(s)	60, 458
Bse3DI	GCAATG	1 cut(s)	939
BseAI	TCCGGA	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	611, 694, 924
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	3 cut(s)	506, 702, 834
BseNI	ACTGG	2 cut(s)	60, 458
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	161, 581, 829
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	25, 162, 467, 552
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	611, 694, 924
BsmAI	GTCTC	4 cut(s)	167, 317, 823, 932
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	3 cut(s)	161, 581, 829
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	69, 128, 601, 904
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	3 cut(s)	119, 512, 947
BspANI	GGCC	3 cut(s)	161, 581, 829
BspCNI	CTCAG	3 cut(s)	505, 703, 833
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	603
BspMI	ACCTGC	2 cut(s)	133, 241
BspPI	GGATC	4 cut(s)	136, 596, 609, 899
BspT104I	TTCGAA	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	939
BsrI	ACTGG	2 cut(s)	60, 458
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	4 cut(s)	69, 128, 601, 904
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	4 cut(s)	270, 367, 625, 817
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	543, 930
BstDEI	CTNAG	4 cut(s)	227, 492, 711, 820
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	4 cut(s)	72, 131, 604, 907
BstMAI	GTCTC	4 cut(s)	167, 317, 823, 932
BstMBI	GATC	4 cut(s)	69, 128, 601, 904
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	366, 813
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	2 cut(s)	75, 81
BstX2I	RGATCY	2 cut(s)	128, 601
BstYI	RGATCY	2 cut(s)	128, 601
BstZI	CGGCCG	1 cut(s)	159
BsuI	GTATCC	2 cut(s)	377, 490
BsuRI	GGCC	3 cut(s)	161, 581, 829
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	508
BveI	ACCTGC	2 cut(s)	133, 241
Cac8I	GCNNGC	2 cut(s)	543, 930
Cfr13I	GGNCC	1 cut(s)	827
CviAII	CATG	3 cut(s)	332, 782, 807
DdeI	CTNAG	4 cut(s)	227, 492, 711, 820
DpnI	GATC	4 cut(s)	71, 130, 603, 906
DpnII	GATC	4 cut(s)	69, 128, 601, 904
DraI	TTTAAA	1 cut(s)	847
DrdI	GACNNNNNNGTC	1 cut(s)	715
DseDI	GACNNNNNNGTC	1 cut(s)	715
EaeI	YGGCCR	2 cut(s)	159, 579
EagI	CGGCCG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	3 cut(s)	335, 785, 810
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	331, 781, 806
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	161, 581, 829
HapII	CCGG	4 cut(s)	25, 162, 467, 552
Hin1II	CATG	3 cut(s)	335, 785, 810
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	205, 564, 680, 769, 940
HpaII	CCGG	4 cut(s)	25, 162, 467, 552
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	3 cut(s)	53, 136, 617
Hpy188I	TCNGA	5 cut(s)	210, 601, 729, 877, 904
Hpy188III	TCNNGA	4 cut(s)	378, 467, 494, 835
Hpy8I	GTNNAC	3 cut(s)	53, 136, 617
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	4 cut(s)	270, 367, 625, 817
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	4 cut(s)	142, 280, 892, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	4 cut(s)	227, 492, 711, 820
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	335, 785, 810
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	69, 128, 601, 904
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	2 cut(s)	123, 641
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	361, 706
MalI	GATC	4 cut(s)	71, 130, 603, 906
MboI	GATC	4 cut(s)	69, 128, 601, 904
MboII	GAAGA	4 cut(s)	75, 81, 311, 642
MflI	RGATCY	2 cut(s)	128, 601
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	7 cut(s)	108, 216, 447, 645, 702, 842, 887
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	3 cut(s)	689, 763, 934
MnlI	CCTC	7 cut(s)	55, 146, 317, 329, 374, 531, 871
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	3 cut(s)	30, 345, 846
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	4 cut(s)	25, 162, 467, 552
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	892
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	4 cut(s)	69, 128, 601, 904
NlaIII	CATG	3 cut(s)	335, 785, 810
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	361, 706
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	810
NspV	TTCGAA	1 cut(s)	562
PciI	ACATGT	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	205, 564
PflMI	CCANNNNNTGG	1 cut(s)	924
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	3 cut(s)	688, 763, 934
PpsI	GAGTC	3 cut(s)	688, 763, 934
PscI	ACATGT	1 cut(s)	806
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	128, 601
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	30, 345, 846
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	4 cut(s)	69, 128, 601, 904
Sau96I	GGNCC	1 cut(s)	827
SchI	GAGTC	3 cut(s)	689, 763, 934
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	123, 641
SfcI	CTRYAG	2 cut(s)	366, 813
SfuI	TTCGAA	1 cut(s)	562
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	7 cut(s)	108, 216, 447, 645, 702, 842, 887
SsiI	CCGC	3 cut(s)	119, 512, 947
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	692
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	270, 367, 625, 817
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	7 cut(s)	5, 34, 203, 309, 377, 562, 836
TasI	AATT	7 cut(s)	108, 216, 447, 645, 702, 842, 887
TfiI	GAWTC	2 cut(s)	205, 564
Tru1I	TTAA	3 cut(s)	30, 345, 846
Tru9I	TTAA	3 cut(s)	30, 345, 846
TseFI	GTSAC	2 cut(s)	361, 706
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	361, 706
TspDTI	ATGAA	2 cut(s)	409, 770
Van91I	CCANNNNNTGG	1 cut(s)	924
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	2 cut(s)	108, 842
XceI	RCATGY	1 cut(s)	810
XspI	CTAG	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.