Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

39511317 .. 39513007

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCGATTGAGCTCAAGCTTTCCCGGATTAATCGAGAACTGGTTGAGGGCAAGATCATGGTGAAGTATGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCCGTCAACTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTTTGCCAAGCCTATTTCGATTCTCTATTGGTTTCATTGGGCCTGGAGTGTCATTGTTGTGCTTGAACTATGCCAACACACCCACGGCTACAGCAGTACTCCTTACAGCAGCCTTATGTTTGAGCTCTCAGTCAAGCTGGCTTTCTCCTCAATATACAATAGATGTGATTGATCATTCACTTTATTTCATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACGATTGATGGTTATGGCAGTAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGGTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

161

Amino Acids

17.14

Weight (kDa)

8.98

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	1 cut(s)	104
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	108, 121
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	2 cut(s)	270, 480
AgsI	TTSAA	2 cut(s)	78, 238
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	13, 19, 297, 309, 428
AluI	AGCT	5 cut(s)	13, 19, 297, 309, 428
Alw21I	GWGCWC	2 cut(s)	15, 299
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	108, 121
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	144, 212
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	93
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	406
BamHI	GGATCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	15, 299
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	15, 299
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	104, 406
BceAI	ACGGC	2 cut(s)	159, 273
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	25, 216
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	25, 216
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	2 cut(s)	237, 393
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	406
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	146, 214
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	15, 299
BsiSI	CCGG	2 cut(s)	25, 147
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	146, 214
Bsp1286I	GDGCHC	3 cut(s)	15, 299, 406
Bsp143I	GATC	3 cut(s)	54, 113, 343
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	146, 214
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	108, 121
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	54, 113, 343
Bst2UI	CCWGG	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	300, 474
BstDSI	CCRYGG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	3 cut(s)	57, 116, 346
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	54, 113, 343
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	23, 214
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	146, 214
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	85
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	269, 479
CviAII	CATG	2 cut(s)	58, 361
CviQI	GTAC	2 cut(s)	269, 479
DdeI	CTNAG	2 cut(s)	300, 474
DpnI	GATC	3 cut(s)	56, 115, 345
DpnII	GATC	3 cut(s)	54, 113, 343
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Ecl136II	GAGCTC	2 cut(s)	13, 297
EclXI	CGGCCG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	15, 299
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	2 cut(s)	13, 297
EcoICRI	GAGCTC	2 cut(s)	13, 297
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	15, 299
FaeI	CATG	2 cut(s)	61, 364
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	57, 360
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	282
FriOI	GRGCYC	2 cut(s)	15, 299
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	2 cut(s)	237, 393
HaeIII	GGCC	2 cut(s)	146, 214
HapII	CCGG	2 cut(s)	25, 147
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	61, 364
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	2 cut(s)	25, 147
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	121, 391
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	121, 391
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	300, 474
Hsp92II	CATG	2 cut(s)	61, 364
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	54, 113, 343
LpnPI	CCDG	9 cut(s)	26, 38, 113, 160, 201, 228, 295, 357, 414
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	108
MalI	GATC	3 cut(s)	56, 115, 345
MboI	GATC	3 cut(s)	54, 113, 343
MboII	GAAGA	1 cut(s)	66
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	3 cut(s)	15, 299, 406
MluCI	AATT	1 cut(s)	93
MnlI	CCTC	4 cut(s)	40, 131, 330, 462
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	229, 396
MspI	CCGG	2 cut(s)	25, 147
MspR9I	CCNGG	2 cut(s)	25, 216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	3 cut(s)	54, 113, 343
NlaIII	CATG	2 cut(s)	61, 364
NlaIV	GGNNCC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	2 cut(s)	15, 299
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	2 cut(s)	270, 480
RsaNI	GTAC	2 cut(s)	269, 479
RseI	CAYNNNNRTG	2 cut(s)	229, 396
SacI	GAGCTC	2 cut(s)	15, 299
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	54, 113, 343
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	25, 216
SduI	GDGCHC	3 cut(s)	15, 299, 406
SetI	ASST	8 cut(s)	15, 21, 132, 299, 311, 430, 473, 480
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	229, 396
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	104
SstI	GAGCTC	2 cut(s)	15, 299
StyD4I	CCNGG	2 cut(s)	23, 214
TaqI	TCGA	3 cut(s)	5, 34, 190
TasI	AATT	1 cut(s)	93
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	196, 349
TspGWI	ACGGA	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.