Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

22105566 .. 22108543

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG217900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATGAAAGGTGATATTGGAATTTTCCAGGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTCAACTTGCAGGTTCAGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTCAGGAACAAAATTGTTGAGCTTAGACCTGCTGGAAAGATTGCTTCAGGCATAACCGAGTATTTAGTAACTGTAGATATATCGAGAGGACACCTGTATAAGTCGTTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCTCAACTGAAATCAGTCTATTGGTTTCATTGGGCCTGGAGTGTCATTGTTGTGCTTGAACTATGCCAACACACCCACGGCTACAGCGGTACTCCTTACAGCAGCCTTATATTTGAGCTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

178

Amino Acids

19.72

Weight (kDa)

6.29

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	112, 223
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	3 cut(s)	98, 404, 498
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	21, 87
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	72, 320, 470
AjnI	CCWGG	2 cut(s)	27, 446
AluBI	AGCT	3 cut(s)	208, 332, 529
AluI	AGCT	3 cut(s)	208, 332, 529
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	2 cut(s)	138, 444
ApeKI	GCWGC	2 cut(s)	167, 513
ApoI	RAATTY	2 cut(s)	21, 87
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	154, 525
BccI	CCATC	2 cut(s)	98, 358
BceAI	ACGGC	2 cut(s)	153, 505
BciT130I	CCWGG	2 cut(s)	29, 448
BciVI	GTATCC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	258, 493
BfuAI	ACCTGC	2 cut(s)	112, 223
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	2 cut(s)	168, 514
BlsI	GCNGC	2 cut(s)	169, 515
Bme1390I	CCNGG	2 cut(s)	29, 448
BmgT120I	GGNCC	1 cut(s)	444
BmrFI	CCNGG	2 cut(s)	29, 448
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	39, 350
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	29, 448
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	202, 398
BseNI	ACTGG	2 cut(s)	39, 350
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	154, 525
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	140, 446
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	141, 359
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	140, 446
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	48, 107
BspACI	CCGC	3 cut(s)	98, 404, 498
BspANI	GGCC	2 cut(s)	140, 446
BspCNI	CTCAG	2 cut(s)	201, 397
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	98
BspMI	ACCTGC	2 cut(s)	112, 223
BspPI	GGATC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	39, 350
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	2 cut(s)	48, 107
Bst2UI	CCWGG	2 cut(s)	29, 448
Bst4CI	ACNGT	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	188, 209, 384
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	51, 110
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	48, 107
BstMCI	CGRYCG	1 cut(s)	141
BstNI	CCWGG	2 cut(s)	29, 448
BstSCI	CCNGG	2 cut(s)	27, 446
BstSFI	CTRYAG	2 cut(s)	258, 493
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	154, 525
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	140, 446
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	400
BveI	ACCTGC	2 cut(s)	112, 223
CaiI	CAGNNNCTG	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	501
CviJI	RGCY	8 cut(s)	140, 175, 208, 332, 446, 492, 516, 529
CviKI_1	RGCY	8 cut(s)	140, 175, 208, 332, 446, 492, 516, 529
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	3 cut(s)	188, 209, 384
DpnI	GATC	2 cut(s)	50, 109
DpnII	GATC	2 cut(s)	48, 107
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	529
EclXI	CGGCCG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	531
Eco52I	CGGCCG	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	529
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	27, 446
EcoT38I	GRGCYC	1 cut(s)	531
FaiI	YATR	9 cut(s)	53, 84, 149, 239, 266, 285, 314, 475, 521
FaqI	GGGAC	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	168, 514
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	2 cut(s)	168, 514
GluI	GCNGC	2 cut(s)	168, 514
GsuI	CTGGAG	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	140, 446
HapII	CCGG	2 cut(s)	141, 359
HgaI	GACGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	141, 359
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	4 cut(s)	190, 270, 359, 386
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	188, 209, 384
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	48, 107
Lsp1109I	GCAGC	2 cut(s)	154, 525
LweI	GCATC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	50, 109
MboI	GATC	2 cut(s)	48, 107
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	4 cut(s)	21, 87, 198, 339
MnlI	CCTC	4 cut(s)	34, 125, 266, 423
MroI	TCCGGA	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	498
MspI	CCGG	2 cut(s)	141, 359
MspR9I	CCNGG	2 cut(s)	29, 448
MvaI	CCWGG	2 cut(s)	29, 448
MvnI	CGCG	1 cut(s)	98
NdeII	GATC	2 cut(s)	48, 107
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	169, 515
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	27, 446
PspGI	CCWGG	2 cut(s)	27, 446
PspPI	GGNCC	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	531
SatI	GCNGC	2 cut(s)	168, 514
Sau3AI	GATC	2 cut(s)	48, 107
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	29, 448
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	7 cut(s)	13, 126, 210, 217, 282, 334, 531
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	2 cut(s)	258, 493
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	4 cut(s)	21, 87, 198, 339
SsiI	CCGC	3 cut(s)	98, 404, 498
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	27, 446
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	182, 269
TasI	AATT	4 cut(s)	21, 87, 198, 339
TfiI	GAWTC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	167, 513
TspDTI	ATGAA	3 cut(s)	20, 301, 428
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	21, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.