Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

35812206 .. 35815512

Gene Structure 3307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1227700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGATAGAGCTCAAGCTTTCTCGGATCAATCGTGTCTATCGCCCTACTGAACTTATTGAGGGTAAAATCGTAGTAAAGTCGTCTTCTTCAATCTCCCACTACGGAATTCGCCTCGCCGTCAACGGATCCGTCAACATGCAGGTTCGTGGAGGATCTGCAGGAGTTATCGAGTCTTTGGTTGGTGTTGCCAAGCCTATTTCCATTGTGAATAAAATTATTGAGGTTAGACCTTCTGGGAAGATTGCTTCTGGCACATCAGAGATTCCATTTTCCATTAATATCAAGCAGCCGGGAGAAAAGAACCTGGAAAAGTTCTACGAGACCTTCCATGGAGGAAATATTAACATTCAGTATTTACTAACAGTAGATATTTCGAGAGGCTACCTGCACAAATCATTATCAACAACAATGGAGTTTATAGTTGAAAGTGATAAAGCCGATCTTCTTGAGCAACCAGTTTCTCCAGAGATGGTTCTCTTTTACCTTACTCAGGATACTCAAAGACATCCGCTGCTTCCTGAACTAAAGTCAGGTGGATTCCGGGTTATTGGGAAAATGTCTACCCAATGTTCGCTATCAGATCCCATTGTTGGTGAACTAACAGTCGAAGCATCTGCAGTTCCGATTTCTTCCATTGACTTGCACTTGCTTCGTGTAGAGTCAATCCTTCTCGGAGAGAGAATTGTAACTGAACAATCTTTGGTTCAGACTACACAGATAGCAGATGGAGATGTCTGTCGTAATATGACTATGCCCATTTATGTTATACTTCCTCGTCTTTTGACTTGTCCTACCGTCTTAGCAGGTCCATTTTCAATAGAATTTAAAGTTGCCGTGGTTGTAACCTTTCAGTCGAACATAGCGAAAATGCCATCAAAATCCGATCCTACAACTCCCAGGCTATGGCTTGCAATGGAAACGTTACCGCTTGAACTTGTTCGAACACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

318

Amino Acids

34.88

Weight (kDa)

7.71

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	11 - 283	1.5e-30	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	133, 396, 797
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	512, 929
AclI	AACGTT	1 cut(s)	923
AclWI	GGATC	6 cut(s)	35, 123, 136, 163, 578, 881
AcsI	RAATTY	2 cut(s)	108, 824
AfiI	CCNNNNNNNGG	3 cut(s)	493, 593, 906
AgsI	TTSAA	4 cut(s)	93, 428, 819, 935
AjnI	CCWGG	2 cut(s)	306, 899
AluBI	AGCT	2 cut(s)	13, 19
AluI	AGCT	2 cut(s)	13, 19
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	6 cut(s)	35, 123, 136, 163, 578, 881
ApeKI	GCWGC	2 cut(s)	289, 514
ApoI	RAATTY	2 cut(s)	108, 824
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	2 cut(s)	294, 545
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	1 cut(s)	943
AvaII	GGWCC	1 cut(s)	809
BamHI	GGATCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	301, 501
BccI	CCATC	3 cut(s)	466, 722, 883
BceAI	ACGGC	2 cut(s)	104, 821
BcgI	CGANNNNNNTGC	4 cut(s)	599, 633, 635, 669
BciT130I	CCWGG	2 cut(s)	308, 901
BciVI	GTATCC	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	294, 545
BcoDI	GTCTC	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	159, 618
BfuAI	ACCTGC	3 cut(s)	133, 396, 797
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	2 cut(s)	290, 515
BlsI	GCNGC	2 cut(s)	291, 516
Bme1390I	CCNGG	4 cut(s)	294, 308, 545, 901
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	4 cut(s)	294, 308, 545, 901
BmsI	GCATC	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	294, 545
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	331, 837, 899
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 593, 906
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	2 cut(s)	308, 901
BseDI	CCNNGG	3 cut(s)	331, 837, 899
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	493, 593, 906
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	301, 501
BsgI	GTGCAG	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	293, 544
BslI	CCNNNNNNNGG	3 cut(s)	493, 593, 906
BsmAI	GTCTC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	2 cut(s)	512, 929
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	2 cut(s)	163, 622
BspMI	ACCTGC	3 cut(s)	133, 396, 797
BspPI	GGATC	6 cut(s)	35, 123, 136, 163, 578, 881
BspT104I	TTCGAA	1 cut(s)	943
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	331, 837, 899
BssMI	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	308, 901
Bst4CI	ACNGT	4 cut(s)	367, 607, 799, 951
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	2 cut(s)	492, 802
BstDSI	CCRYGG	2 cut(s)	331, 837
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	6 cut(s)	30, 131, 158, 445, 586, 889
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
BstNI	CCWGG	2 cut(s)	308, 901
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	4 cut(s)	292, 306, 543, 899
BstSFI	CTRYAG	2 cut(s)	159, 618
BstV1I	GCAGC	2 cut(s)	301, 501
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	3 cut(s)	128, 155, 583
BstYI	RGATCY	3 cut(s)	128, 155, 583
BsuI	GTATCC	1 cut(s)	490
BtgI	CCRYGG	2 cut(s)	331, 837
BtsCI	GGATG	1 cut(s)	508
BveI	ACCTGC	3 cut(s)	133, 396, 797
Cac8I	GCNNGC	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	809
CviAII	CATG	2 cut(s)	139, 332
CviJI	RGCY	8 cut(s)	13, 19, 196, 292, 384, 440, 904, 910
CviKI_1	RGCY	8 cut(s)	13, 19, 196, 292, 384, 440, 904, 910
DdeI	CTNAG	2 cut(s)	492, 802
DpnI	GATC	6 cut(s)	29, 130, 157, 444, 585, 888
DpnII	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
DraI	TTTAAA	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	306, 899
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	142, 335
FaiI	YATR	9 cut(s)	140, 333, 422, 749, 755, 765, 770, 863, 907
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	2 cut(s)	138, 331
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	2 cut(s)	290, 515
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	290, 515
GluI	GCNGC	2 cut(s)	290, 515
GsuI	CTGGAG	1 cut(s)	450
HapII	CCGG	2 cut(s)	293, 544
Hin1II	CATG	2 cut(s)	142, 335
HincII	GTYRAC	2 cut(s)	124, 136
HindII	GTYRAC	2 cut(s)	124, 136
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	4 cut(s)	173, 265, 540, 662
HpaII	CCGG	2 cut(s)	293, 544
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	4 cut(s)	124, 136, 564, 599
Hpy188I	TCNGA	7 cut(s)	27, 262, 583, 627, 677, 711, 886
Hpy188III	TCNNGA	5 cut(s)	378, 449, 467, 494, 521
Hpy8I	GTNNAC	4 cut(s)	124, 136, 564, 599
HpyAV	CCTTC	3 cut(s)	243, 337, 680
HpyCH4III	ACNGT	4 cut(s)	367, 607, 799, 951
HpyCH4IV	ACGT	1 cut(s)	923
HpyCH4V	TGCA	6 cut(s)	142, 161, 391, 620, 646, 914
HpyF3I	CTNAG	2 cut(s)	492, 802
HpySE526I	ACGT	1 cut(s)	923
Hsp92II	CATG	2 cut(s)	142, 335
Kzo9I	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
Lsp1109I	GCAGC	2 cut(s)	301, 501
LweI	GCATC	1 cut(s)	623
MaeII	ACGT	1 cut(s)	923
MaeIII	GTNAC	3 cut(s)	688, 844, 924
MalI	GATC	6 cut(s)	29, 130, 157, 444, 585, 888
MboI	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
MboII	GAAGA	5 cut(s)	78, 81, 253, 437, 624
MflI	RGATCY	3 cut(s)	128, 155, 583
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	108, 216, 684, 824
MlyI	GAGTC	2 cut(s)	182, 671
MnlI	CCTC	7 cut(s)	55, 125, 146, 217, 329, 374, 786
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	3 cut(s)	279, 345, 828
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	2 cut(s)	293, 544
MspR9I	CCNGG	4 cut(s)	294, 308, 545, 901
MvaI	CCWGG	2 cut(s)	308, 901
NciI	CCSGG	2 cut(s)	294, 545
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
NlaIII	CATG	2 cut(s)	142, 335
NlaIV	GGNNCC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	142
NspV	TTCGAA	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 863
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	265, 540
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	2 cut(s)	291, 516
PleI	GAGTC	2 cut(s)	181, 670
PpsI	GAGTC	2 cut(s)	181, 670
PshBI	ATTAAT	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	923
Psp6I	CCWGG	2 cut(s)	306, 899
PspGI	CCWGG	2 cut(s)	306, 899
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	809
PstI	CTGCAG	2 cut(s)	163, 622
PsuI	RGATCY	3 cut(s)	128, 155, 583
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	279, 345, 828
SatI	GCNGC	2 cut(s)	290, 515
Sau3AI	GATC	6 cut(s)	27, 128, 155, 442, 583, 886
Sau96I	GGNCC	1 cut(s)	809
SchI	GAGTC	2 cut(s)	182, 671
ScrFI	CCNGG	4 cut(s)	294, 308, 545, 901
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	623
SfcI	CTRYAG	2 cut(s)	159, 618
SfuI	TTCGAA	1 cut(s)	943
SinI	GGWCC	1 cut(s)	809
SmlI	CTYRAG	2 cut(s)	14, 449
SmoI	CTYRAG	2 cut(s)	14, 449
Sse9I	AATT	4 cut(s)	108, 216, 684, 824
SsiI	CCGC	2 cut(s)	512, 929
SspI	AATATT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	4 cut(s)	292, 306, 543, 899
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	367, 607, 799, 951
TaiI	ACGT	1 cut(s)	926
TaqI	TCGA	6 cut(s)	5, 171, 377, 609, 857, 943
TasI	AATT	4 cut(s)	108, 216, 684, 824
TfiI	GAWTC	2 cut(s)	265, 540
Tru1I	TTAA	3 cut(s)	279, 345, 828
Tru9I	TTAA	3 cut(s)	279, 345, 828
TseI	GCWGC	2 cut(s)	289, 514
TspGWI	ACGGA	3 cut(s)	120, 121, 141
Van91I	CCANNNNNTGG	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	809
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	2 cut(s)	108, 824
XceI	RCATGY	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.