Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

945209 .. 950078

Gene Structure 4870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCATATCAGGCAACCAAGAGAAGATAACCTCGAAAAGTTCTATGAGACATTCCATGGAGGAAATATTAACATTCAGTATTTAGTGACTGTAGATATATCGAGAGGATACCTGTATAAGTCGTTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCCCAACTGAAATCAGGTGGATTTCGAATCATTGGAAAAATGGCCACTCAATGTTCTTTATCGGATCCCGTTAGTGGTGAACTAACAGTAGAAGCATCTGCAGTTCCAATATCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAAACTACACAGATAGCAGATGGAGATGTCTGTCATAATATGACTCTGCCCATTCATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGTTGTTATGGTCATAACATTTCAGTCACAGGTAGCCAAATTGCATTCAAAATCTGATCCTACAACTCCCAGACTATGGCTTGCAATGGAGACTCTACCGCTTGAACTTGTTAGAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

225

Amino Acids

25.22

Weight (kDa)

5.97

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	10 - 191	2e-19	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	2 cut(s)	236, 653
AclWI	GGATC	3 cut(s)	302, 315, 605
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	548
AfiI	CCNNNNNNNGG	3 cut(s)	317, 400, 630
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	5 cut(s)	152, 434, 548, 603, 659
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	3 cut(s)	41, 529, 638
AlwI	GGATC	3 cut(s)	302, 315, 605
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	2 cut(s)	285, 533
ApoI	RAATTY	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	307
BccI	CCATC	2 cut(s)	190, 446
BciVI	GTATCC	2 cut(s)	101, 214
BcoDI	GTCTC	3 cut(s)	41, 529, 638
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	3 cut(s)	90, 342, 519
BfuI	GTATCC	2 cut(s)	101, 214
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 400, 630
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	317, 400, 630
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	3 cut(s)	230, 408, 540
BseNI	ACTGG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	287, 535
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	317, 400, 630
BsmAI	GTCTC	3 cut(s)	41, 529, 638
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	2 cut(s)	287, 535
Bsp119I	TTCGAA	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	307, 610
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	2 cut(s)	236, 653
BspANI	GGCC	2 cut(s)	287, 535
BspCNI	CTCAG	3 cut(s)	229, 409, 539
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	302, 315, 605
BspT104I	TTCGAA	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	307, 610
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	91, 331, 523
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	3 cut(s)	216, 417, 526
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	310, 613
BstMAI	GTCTC	3 cut(s)	41, 529, 638
BstMBI	GATC	2 cut(s)	307, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	516
BstSFI	CTRYAG	3 cut(s)	90, 342, 519
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	2 cut(s)	101, 214
BsuRI	GGCC	2 cut(s)	287, 535
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	533
CviAII	CATG	3 cut(s)	56, 488, 513
CviJI	RGCY	5 cut(s)	164, 287, 535, 590, 634
CviKI_1	RGCY	5 cut(s)	164, 287, 535, 590, 634
DdeI	CTNAG	3 cut(s)	216, 417, 526
DpnI	GATC	2 cut(s)	309, 612
DpnII	GATC	2 cut(s)	307, 610
DraI	TTTAAA	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	59, 491, 516
FatI	CATG	3 cut(s)	55, 487, 512
FokI	GGATG	1 cut(s)	219
FspBI	CTAG	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	287, 535
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	3 cut(s)	59, 491, 516
HinfI	GANTC	4 cut(s)	270, 386, 475, 646
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	307, 610
Hpy188III	TCNNGA	4 cut(s)	102, 191, 218, 541
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	3 cut(s)	91, 331, 523
HpyCH4V	TGCA	4 cut(s)	4, 344, 598, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	216, 417, 526
Hsp92II	CATG	3 cut(s)	59, 491, 516
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	307, 610
LpnPI	CCDG	8 cut(s)	125, 195, 203, 204, 243, 516, 569, 637
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	3 cut(s)	85, 412, 579
MalI	GATC	2 cut(s)	309, 612
MboI	GATC	2 cut(s)	307, 610
MboII	GAAGA	2 cut(s)	35, 348
MflI	RGATCY	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	4 cut(s)	171, 408, 548, 593
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	3 cut(s)	395, 469, 640
MnlI	CCTC	3 cut(s)	41, 53, 98
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	69, 552
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	598
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	307, 610
NlaIII	CATG	3 cut(s)	59, 491, 516
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	85, 412, 579
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	516
NspV	TTCGAA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	512
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	630
PleI	GAGTC	3 cut(s)	394, 469, 640
PpsI	GAGTC	3 cut(s)	394, 469, 640
PscI	ACATGT	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	69, 552
Sau3AI	GATC	2 cut(s)	307, 610
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	3 cut(s)	395, 469, 640
SetI	ASST	6 cut(s)	33, 114, 166, 262, 588, 677
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	3 cut(s)	90, 342, 519
SfuI	TTCGAA	1 cut(s)	268
Sse9I	AATT	4 cut(s)	171, 408, 548, 593
SsiI	CCGC	2 cut(s)	236, 653
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	3 cut(s)	91, 331, 523
TaqI	TCGA	4 cut(s)	33, 101, 268, 542
TasI	AATT	4 cut(s)	171, 408, 548, 593
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	69, 552
Tru9I	TTAA	2 cut(s)	69, 552
TseFI	GTSAC	3 cut(s)	85, 412, 579
Tsp45I	GTSAC	3 cut(s)	85, 412, 579
TspDTI	ATGAA	2 cut(s)	133, 476
Van91I	CCANNNNNTGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.