Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

56542425 .. 56561620

Gene Structure 19196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG416100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCGATTGAGCTCAAGCTTTCCCGGATTAATCGAGTTTATCGTCCTTCTGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTTATGGATCTATCAACTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCAGCCAAGCCTATTTCGATTCTGCGATTCAATGAAGAATTGAAGATGCCTTCGCAGGATAAAGTGACGTGCAGACGGAATGTATATATGGAGCAATATTTAAAGGAAAATGGAATAATATATCAAATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

106

Amino Acids

11.92

Weight (kDa)

9.67

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccII	CGCG	1 cut(s)	119
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	93, 217, 229
AjiI	CACGTC	1 cut(s)	255
AluBI	AGCT	2 cut(s)	13, 19
AluI	AGCT	2 cut(s)	13, 19
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	108
AseI	ATTAAT	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	123, 222
BpiI	GAAGAC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	60
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	200
BsgI	GTGCAG	2 cut(s)	207, 277
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	25, 162
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	69, 128
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	69, 128
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	72, 131
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	69, 128
BstMCI	CGRYCG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	133
CseI	GACGC	1 cut(s)	75
CviJI	RGCY	5 cut(s)	13, 19, 161, 191, 196
CviKI_1	RGCY	5 cut(s)	13, 19, 161, 191, 196
DpnI	GATC	2 cut(s)	71, 130
DpnII	GATC	2 cut(s)	69, 128
DraI	TTTAAA	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	15
FaiI	YATR	8 cut(s)	74, 105, 126, 170, 271, 273, 275, 307
FaqI	GGGAC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	25, 162
HgaI	GACGC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	205, 213
HpaII	CCGG	2 cut(s)	25, 162
Hpy188I	TCNGA	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	57, 246
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	142, 188, 258
HpySE526I	ACGT	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	69, 128
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	38, 41, 128, 175, 227
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	2 cut(s)	123, 222
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	71, 130
MboI	GATC	2 cut(s)	69, 128
MboII	GAAGA	3 cut(s)	81, 233, 241
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	108, 224, 312
MnlI	CCTC	2 cut(s)	55, 146
MseI	TTAA	2 cut(s)	30, 287
MspI	CCGG	2 cut(s)	25, 162
MspR9I	CCNGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	119
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	69, 128
NmuCI	GTSAC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	205, 213
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	190
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	30, 287
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	69, 128
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	4 cut(s)	15, 21, 147, 257
SfaNI	GCATC	2 cut(s)	123, 222
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	108, 224, 312
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	23
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	3 cut(s)	5, 34, 203
TasI	AATT	3 cut(s)	108, 224, 312
TfiI	GAWTC	2 cut(s)	205, 213
Tru1I	TTAA	2 cut(s)	30, 287
Tru9I	TTAA	2 cut(s)	30, 287
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.