Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

23456029 .. 23456340

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAGTTCATAGTTGAAAGTGATAAAGCTGATCTTCTCGAGCGACCAGTTTCTCCGGAGATGGTTATCTTTTACCTTACTCAGGATACTCAAAGACATCCGCTGCTTCCTGAACTAAGGTCAGGTTGGCTTCTCACTTTGCATTATGTGATATTCTTTCGCTTTCTAGTTAGCGTTTTTAAAACATTGAAGTATTGTTTTCACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

70

Amino Acids

8.35

Weight (kDa)

6.25

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	17, 190
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	65
BseAI	TCCGGA	1 cut(s)	55
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	81, 116
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	97
CviJI	RGCY	2 cut(s)	29, 130
CviKI_1	RGCY	2 cut(s)	29, 130
DdeI	CTNAG	2 cut(s)	81, 116
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	80
FaiI	YATR	2 cut(s)	11, 147
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	104
HapII	CCGG	1 cut(s)	56
HpaII	CCGG	1 cut(s)	56
Hpy188III	TCNNGA	4 cut(s)	38, 56, 83, 110
HpyCH4V	TGCA	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	81, 116
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	5 cut(s)	60, 68, 69, 108, 123
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	167
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	26
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	2 cut(s)	180, 208
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	31
PaeR7I	CTCGAG	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	180, 208
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	4 cut(s)	31, 78, 122, 127
Sfr274I	CTCGAG	1 cut(s)	38
SgeI	CNNG	8 cut(s)	50, 52, 59, 68, 95, 122, 135, 179
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	180, 208
Tru9I	TTAA	2 cut(s)	180, 208
TseI	GCWGC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.