Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

9972722 .. 9975410

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17430.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCGATTGAGCTCAAGCTTTCCCGGGTTAATCGAGTCTATCGTCCTTCTGAGGTTGTTGAAGGCAAAATCATAGTGAAATCTTCGTCTTCGATCTCCCACTATGGAATTCGGATCGCGGTTGATGGGTCTGTCACTCTGCAGGTTCGGGGAGGATCGGCCGGAGTTATCGAGAGTCTGGTTGGTGCTGCCAAGCCTATTTCTATTCTCAGGAACAAAATTGTTGAGGTTAGACCTGCTGGGAAGATTGCTTCAGGCATTACCGAGATACCATTTTCCATGAATATCAGGCAACCGAGAGAAGAGAACCTCGAAAAGTTCTATGAGACTTTCCATGGAGGAAATATTAACATTCAGTATTTAGTAACTGTAGATATATCGAGAGGGTACCTGTATAAGTCATTATCGACAACCATGGAGTTCATAGTTGAAAGTGATAAGGCTGATGCTATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACTCAAAGACATCCACTACTTCCTCAACTGAAATCAGGTGGATTTCGAATTGTTGGGAAGATGGCCACTCAGTGTTCCTTAACGGATCCTGTTAGTGGTGAACTGACAGTAGAAGGATCTGCAGTTCCAATTTCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGATAAAATTGTGACCGAGAAATCTGTGGTTCAGACTACACAGATAGCAGATGGAGACGTCTGTCATAATATGACTCTGCCCATACATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGTCGTCATAGTCATAACATTTCAGTCAGAGGTAGCCAAATTGCATTCGAAGTCTGATCCTACAACTCCCAGGCTATGGCTTGCAATGGAGAGTCTACCGCTTGAACTCGTTAGAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

319

Amino Acids

34.95

Weight (kDa)

7.74

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	10 - 241	2.6e-15	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	741
Acc36I	ACCTGC	2 cut(s)	133, 244
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AccB7I	CCANNNNNTGG	1 cut(s)	909
AccI	GTMKAC	1 cut(s)	928
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	2 cut(s)	119, 932
AclWI	GGATC	6 cut(s)	122, 163, 581, 594, 625, 884
AcoI	YGGCCR	2 cut(s)	159, 564
AcsI	RAATTY	2 cut(s)	108, 827
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	738
AdeI	CACNNNGTG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	596, 679, 909
AflIII	ACRYGT	2 cut(s)	766, 791
AgsI	TTSAA	4 cut(s)	62, 431, 827, 938
AjnI	CCWGG	1 cut(s)	902
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	2 cut(s)	13, 19
AluI	AGCT	2 cut(s)	13, 19
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	320, 729, 808
AlwI	GGATC	6 cut(s)	122, 163, 581, 594, 625, 884
Ama87I	CYCGRG	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	3 cut(s)	159, 564, 812
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	108, 827
Asp718I	GGTACC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	812
AsuC2I	CCSGG	2 cut(s)	25, 26
AsuHPI	GGTGA	1 cut(s)	611
AsuII	TTCGAA	2 cut(s)	547, 881
AvaI	CYCGRG	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	4 cut(s)	119, 469, 556, 725
BciT130I	CCWGG	1 cut(s)	904
BciVI	GTATCC	1 cut(s)	493
BcnI	CCSGG	2 cut(s)	25, 26
BcoDI	GTCTC	3 cut(s)	320, 729, 808
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	4 cut(s)	140, 369, 621, 798
BfuAI	ACCTGC	2 cut(s)	133, 244
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	3 cut(s)	25, 26, 904
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	2 cut(s)	389, 588
BmrFI	CCNGG	3 cut(s)	25, 26, 904
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	81
Bpu14I	TTCGAA	2 cut(s)	547, 881
BpuMI	CCSGG	2 cut(s)	25, 26
BsaHI	GRCGYC	1 cut(s)	738
BsaJI	CCNNGG	4 cut(s)	24, 334, 414, 902
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	3 cut(s)	596, 679, 909
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	4 cut(s)	24, 334, 414, 902
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	596, 679, 909
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	5 cut(s)	42, 223, 509, 584, 819
BseNI	ACTGG	1 cut(s)	461
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	161, 566, 814
BshNI	GGYRCC	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	3 cut(s)	25, 162, 470
BslI	CCNNNNNNNGG	3 cut(s)	596, 679, 909
BsmAI	GTCTC	3 cut(s)	320, 729, 808
BsmBI	CGTCTC	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	161, 566, 814
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	2 cut(s)	547, 881
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
Bsp19I	CCATGG	2 cut(s)	334, 414
BspACI	CCGC	2 cut(s)	119, 932
BspANI	GGCC	3 cut(s)	161, 566, 814
BspCNI	CTCAG	5 cut(s)	43, 222, 508, 583, 818
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	389, 588
BspMAI	CTGCAG	2 cut(s)	144, 625
BspMI	ACCTGC	2 cut(s)	133, 244
BspPI	GGATC	6 cut(s)	122, 163, 581, 594, 625, 884
BspT104I	TTCGAA	2 cut(s)	547, 881
BspT107I	GGYRCC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	4 cut(s)	24, 334, 414, 902
BssMI	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
BssNI	GRCGYC	1 cut(s)	738
BssT1I	CCWWGG	2 cut(s)	334, 414
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	3 cut(s)	370, 610, 802
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	738
BstBI	TTCGAA	2 cut(s)	547, 881
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	5 cut(s)	51, 209, 495, 570, 805
BstDSI	CCRYGG	2 cut(s)	334, 414
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	6 cut(s)	96, 117, 158, 589, 620, 892
BstMAI	GTCTC	3 cut(s)	320, 729, 808
BstMBI	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
BstMCI	CGRYCG	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	904
BstNSI	RCATGY	2 cut(s)	770, 795
BstPAI	GACNNNNGTC	1 cut(s)	741
BstSCI	CCNGG	3 cut(s)	23, 24, 902
BstSFI	CTRYAG	4 cut(s)	140, 369, 621, 798
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	586, 617
BstYI	RGATCY	2 cut(s)	586, 617
BstZI	CGGCCG	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	161, 566, 814
BtgI	CCRYGG	2 cut(s)	334, 414
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	578
BveI	ACCTGC	2 cut(s)	133, 244
Cac8I	GCNNGC	1 cut(s)	915
Cfr13I	GGNCC	1 cut(s)	812
Cfr9I	CCCGGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	5 cut(s)	280, 335, 415, 767, 792
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	5 cut(s)	51, 209, 495, 570, 805
DpnI	GATC	6 cut(s)	95, 116, 157, 588, 619, 891
DpnII	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
DraI	TTTAAA	1 cut(s)	832
DraIII	CACNNNGTG	1 cut(s)	573
EaeI	YGGCCR	2 cut(s)	159, 564
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	334, 414
Eco24I	GRGCYC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	902
EcoT14I	CCWWGG	2 cut(s)	334, 414
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	334, 414
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	5 cut(s)	283, 338, 418, 770, 795
FatI	CATG	5 cut(s)	279, 334, 414, 766, 791
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	161, 566, 814
HapII	CCGG	3 cut(s)	25, 162, 470
Hin1I	GRCGYC	1 cut(s)	738
Hin1II	CATG	5 cut(s)	283, 338, 418, 770, 795
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	36, 175, 665, 754, 925
HpaII	CCGG	3 cut(s)	25, 162, 470
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	602, 929
Hpy188I	TCNGA	5 cut(s)	52, 114, 714, 862, 889
Hpy188III	TCNNGA	6 cut(s)	172, 211, 381, 470, 497, 820
Hpy8I	GTNNAC	2 cut(s)	602, 929
HpyAV	CCTTC	4 cut(s)	56, 57, 608, 683
HpyCH4III	ACNGT	3 cut(s)	370, 610, 802
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	4 cut(s)	142, 623, 877, 917
HpyF3I	CTNAG	5 cut(s)	51, 209, 495, 570, 805
HpySE526I	ACGT	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	738
Hsp92II	CATG	5 cut(s)	283, 338, 418, 770, 795
Kpn2I	TCCGGA	1 cut(s)	469
KpnI	GGTACC	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	3 cut(s)	133, 364, 691
MalI	GATC	6 cut(s)	95, 116, 157, 588, 619, 891
MboI	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
MboII	GAAGA	6 cut(s)	75, 81, 256, 314, 571, 627
MflI	RGATCY	2 cut(s)	586, 617
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	7 cut(s)	108, 219, 549, 630, 687, 827, 872
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	5 cut(s)	45, 184, 674, 748, 934
MnlI	CCTC	8 cut(s)	46, 146, 220, 320, 332, 377, 534, 856
Mox20I	TGGCCA	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	4 cut(s)	30, 348, 581, 831
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	3 cut(s)	25, 162, 470
MspR9I	CCNGG	3 cut(s)	25, 26, 904
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	904
MvnI	CGCG	1 cut(s)	119
NciI	CCSGG	2 cut(s)	25, 26
NcoI	CCATGG	2 cut(s)	334, 414
NdeII	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
NlaIII	CATG	5 cut(s)	283, 338, 418, 770, 795
NlaIV	GGNNCC	2 cut(s)	389, 588
NmuCI	GTSAC	2 cut(s)	133, 691
NspI	RCATGY	2 cut(s)	770, 795
NspV	TTCGAA	2 cut(s)	547, 881
PciI	ACATGT	2 cut(s)	766, 791
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	877
PflMI	CCANNNNNTGG	1 cut(s)	909
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	5 cut(s)	44, 183, 673, 748, 933
PpsI	GAGTC	5 cut(s)	44, 183, 673, 748, 933
PscI	ACATGT	2 cut(s)	766, 791
PshAI	GACNNNNGTC	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	902
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	2 cut(s)	389, 588
PspPI	GGNCC	1 cut(s)	812
PstI	CTGCAG	2 cut(s)	144, 625
PsuI	RGATCY	2 cut(s)	586, 617
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	4 cut(s)	30, 348, 581, 831
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	6 cut(s)	93, 114, 155, 586, 617, 889
Sau96I	GGNCC	1 cut(s)	812
SchI	GAGTC	5 cut(s)	45, 184, 674, 748, 934
ScrFI	CCNGG	3 cut(s)	25, 26, 904
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	4 cut(s)	140, 369, 621, 798
SfuI	TTCGAA	2 cut(s)	547, 881
SmaI	CCCGGG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	7 cut(s)	108, 219, 549, 630, 687, 827, 872
SsiI	CCGC	2 cut(s)	119, 932
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	677
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	23, 24, 902
StyI	CCWWGG	2 cut(s)	334, 414
TaaI	ACNGT	3 cut(s)	370, 610, 802
TaiI	ACGT	1 cut(s)	741
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	7 cut(s)	108, 219, 549, 630, 687, 827, 872
Tru1I	TTAA	4 cut(s)	30, 348, 581, 831
Tru9I	TTAA	4 cut(s)	30, 348, 581, 831
TscAI	CASTG	1 cut(s)	578
TseFI	GTSAC	2 cut(s)	133, 691
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	133, 691
TspDTI	ATGAA	2 cut(s)	296, 412
TspGWI	ACGGA	1 cut(s)	599
TspMI	CCCGGG	1 cut(s)	24
TspRI	CASTG	1 cut(s)	578
Van91I	CCANNNNNTGG	1 cut(s)	909
XapI	RAATTY	2 cut(s)	108, 827
XceI	RCATGY	2 cut(s)	770, 795
XmaI	CCCGGG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	928
XspI	CTAG	1 cut(s)	677
ZraI	GACGTC	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.