Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1189699 .. 1190923

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCAGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCTCAACTGAAATCAGGTGGATTTCGAATCATTGGAAAAATGGCCACTCAATGTTCTTTATCGGATCCCGTTAGTGGTGAACTAACAGTAGAAGCATCTGCAGTTCCAATTTCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAGACTACACAGATAGCAGATGGAGATGTCTGTCATAATATGACTCTGCCCATTCATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGTTGTCATAGTCATAACATTTCAGTCACAGGTAGCCAAATTGCATTCAAAATCTGATCCTACAACTCCCAGACTATGGCTTGCAATGGAGACTCTACCGCTTGAACTTGTTAGAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

180

Amino Acids

19.87

Weight (kDa)

5.71

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	55 - 146	2.3e-12	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	495
AciI	CCGC	2 cut(s)	101, 518
AclWI	GGATC	3 cut(s)	167, 180, 470
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	182, 265, 495
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	17, 413, 468, 524
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	394, 503
AlwI	GGATC	3 cut(s)	167, 180, 470
AoxI	GGCC	2 cut(s)	150, 398
ApoI	RAATTY	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	172
BccI	CCATC	2 cut(s)	55, 311
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	394, 503
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	207, 384
BfuI	GTATCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 265, 495
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	182, 265, 495
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	3 cut(s)	95, 273, 405
BseNI	ACTGG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	152, 400
BslI	CCNNNNNNNGG	3 cut(s)	182, 265, 495
BsmAI	GTCTC	2 cut(s)	394, 503
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	152, 400
Bsp119I	TTCGAA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	172, 475
BspACI	CCGC	2 cut(s)	101, 518
BspANI	GGCC	2 cut(s)	152, 400
BspCNI	CTCAG	3 cut(s)	94, 274, 404
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	3 cut(s)	167, 180, 470
BspT104I	TTCGAA	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	172, 475
Bst4CI	ACNGT	2 cut(s)	196, 388
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	81, 282, 391
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	175, 478
BstMAI	GTCTC	2 cut(s)	394, 503
BstMBI	GATC	2 cut(s)	172, 475
BstNSI	RCATGY	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	207, 384
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	152, 400
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	398
CviAII	CATG	2 cut(s)	353, 378
CviJI	RGCY	5 cut(s)	29, 152, 400, 455, 499
CviKI_1	RGCY	5 cut(s)	29, 152, 400, 455, 499
DdeI	CTNAG	3 cut(s)	81, 282, 391
DpnI	GATC	2 cut(s)	174, 477
DpnII	GATC	2 cut(s)	172, 475
DraI	TTTAAA	1 cut(s)	418
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	150
FaeI	CATG	2 cut(s)	356, 381
FatI	CATG	2 cut(s)	352, 377
FokI	GGATG	1 cut(s)	84
FspBI	CTAG	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	152, 400
Hin1II	CATG	2 cut(s)	356, 381
HinfI	GANTC	4 cut(s)	135, 251, 340, 511
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	172, 300, 475
Hpy188III	TCNNGA	3 cut(s)	56, 83, 406
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	196, 388
HpyCH4V	TGCA	3 cut(s)	209, 463, 503
HpyF3I	CTNAG	3 cut(s)	81, 282, 391
Hsp92II	CATG	2 cut(s)	356, 381
Kzo9I	GATC	2 cut(s)	172, 475
LpnPI	CCDG	7 cut(s)	60, 68, 69, 108, 381, 434, 502
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	277, 444
MalI	GATC	2 cut(s)	174, 477
MboI	GATC	2 cut(s)	172, 475
MboII	GAAGA	1 cut(s)	213
MflI	RGATCY	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	5 cut(s)	36, 216, 273, 413, 458
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	260, 334, 505
MnlI	CCTC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	463
NdeII	GATC	2 cut(s)	172, 475
NlaIII	CATG	2 cut(s)	356, 381
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	2 cut(s)	277, 444
NspI	RCATGY	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	377
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	495
PleI	GAGTC	3 cut(s)	259, 334, 505
PpsI	GAGTC	3 cut(s)	259, 334, 505
PscI	ACATGT	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	2 cut(s)	172, 475
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	3 cut(s)	260, 334, 505
SetI	ASST	4 cut(s)	31, 127, 453, 542
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	2 cut(s)	207, 384
SfuI	TTCGAA	1 cut(s)	133
Sse9I	AATT	5 cut(s)	36, 216, 273, 413, 458
SsiI	CCGC	2 cut(s)	101, 518
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	196, 388
TaqI	TCGA	2 cut(s)	133, 407
TasI	AATT	5 cut(s)	36, 216, 273, 413, 458
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	2 cut(s)	277, 444
Tsp45I	GTSAC	2 cut(s)	277, 444
TspDTI	ATGAA	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	381
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.